Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20796
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    28   0.81 
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.4  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   1.9  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.3  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   7.5  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   10.0 
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   10.0 
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    25   10.0 

>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 454 RSERWREMQESRNNDXCGRC 513
           R +RWRE  E RN D   RC
Sbjct: 171 RKKRWREQNEERNKDNDLRC 190


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 171 VNSYLGSEIEYG--ANGS-KSGKTNSRMSTLSS 260
           VNS+LG+   YG   NGS +     SRMSTL S
Sbjct: 37  VNSFLGNRTSYGEAVNGSPQYDYMRSRMSTLGS 69


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 301 QLDPRSGLARQGPRR-LSR*VPRLHPSRPAER 393
           QLDPR+ L  Q PRR LSR   RL    P  R
Sbjct: 205 QLDPRTMLQLQWPRRQLSRLCKRLSLKEPVYR 236


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 159 DVPLVNSYLGSEIEYGANGSKSGKTNSRMSTLSSGRVRA 275
           D PL+ S+  S I   A    S   N + STLSS + R+
Sbjct: 166 DSPLLKSFNDSAIPENAANLSSSSKNMKDSTLSSQKARS 204


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 552 WYIILFERGSCMATPPTXIVISTFLHFAPS 463
           +++ LF R S    PP+ ++I TFL    S
Sbjct: 523 FFMTLFSRSSSTILPPSILLILTFLGIVAS 552


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +1

Query: 298 PQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHRGGQRCNQETTVHT--ATEEVRSERW 468
           P  DP S   R GP  L+R    LH +   +      R + +T + T   T++ R  RW
Sbjct: 33  PGWDPNSEYFRPGPTMLNRLQEHLHDTILPDVLAASYRHDIDTALSTDEHTQKDRLPRW 91


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 289 TERPQLDPRSGLARQGP 339
           T  P+LDP++GL+R  P
Sbjct: 379 TATPRLDPKTGLSRYRP 395


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 258 KTGSTFWS*FCRFSIRSRHIQSHCLNNCL 172
           + GST    F RF+++ R  Q  CL+ CL
Sbjct: 14  RNGSTI---FRRFALKLRPYQEECLSACL 39


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 295 VRCPVPFALTLPEDRVDILELVLPL 221
           +R P P A  LP  +V + E +LP+
Sbjct: 158 IRDPTPNAFVLPGGKVFVFEGILPM 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,489
Number of Sequences: 5004
Number of extensions: 38672
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)