Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20796
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0549 - 19352545-19353420                                         31   0.47 
02_01_0651 - 4844263-4844346,4844433-4844498,4844961-4845026,484...    31   0.62 
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15...    31   0.82 
12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421...    28   4.4  
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    28   4.4  

>07_03_0549 - 19352545-19353420
          Length = 291

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 298 PQL--DPRSGLARQGPRRLSR*VPRLHPSRPAERHRGGQ 408
           PQ+   PR   A   P    R  PRLH S PA R RG +
Sbjct: 5   PQILPSPRLAAAAASPNSAFRPAPRLHSSAPARRGRGAR 43


>02_01_0651 -
           4844263-4844346,4844433-4844498,4844961-4845026,
           4845113-4845168,4845340-4845412,4845538-4845622,
           4845710-4845822,4845957-4846029,4846509-4846907,
           4846999-4847117
          Length = 377

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = -1

Query: 294 FGAPFPLPLPCQKTGSTFWS*FCRFSIRSRHIQSHCLNNC 175
           FG+P PLPLP  +  +TF +   R + R R I S+ L NC
Sbjct: 8   FGSPPPLPLPRLRRRATFSAGARRSAARGR-ITSNYLRNC 46


>06_01_0010 -
           151694-151951,152433-152489,152683-152774,153432-153531,
           153585-154211,154300-154638,154740-154991,155083-155556
          Length = 732

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
 Frame = +1

Query: 289 TERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERH-----RGGQRCNQETTVHTATEEV 453
           T +  +DP+ G A +  R +   V R   S+P   H       G  CN   + +   E V
Sbjct: 469 TAQDLVDPQQGTAARRIRLVCS-VERASVSQPVSSHLQSEYEAGSCCNTRNSSNNKKESV 527

Query: 454 RSERWREMQESRNNDXCGRCCHTGTTFEQYN 546
           RSE           D  G CC+TG++   ++
Sbjct: 528 RSE-----------DEAGSCCNTGSSSNNHS 547


>12_01_0536 -
           4212206-4212369,4212476-4212629,4212713-4212811,
           4212917-4213124,4214437-4214639,4214728-4214801,
           4214968-4215043,4215256-4215360
          Length = 360

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 272 GKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPK 391
           GK  G P+GR WI  P    KG +      +G   +D+ K
Sbjct: 132 GKSEGGPSGRYWILDPIDGTKGFIRGDQYAIGLALLDEGK 171


>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
            6069207-6069291,6069421-6069580,6069667-6069743,
            6069848-6069898,6069979-6070069,6070167-6070468,
            6070549-6070830,6070911-6071388,6071457-6071560,
            6071647-6071809,6071895-6072017,6072099-6072217,
            6072304-6072636,6072713-6073003,6073088-6073171,
            6073260-6073393,6073478-6073705,6073795-6073966,
            6074062-6074316,6074408-6074668
          Length = 1444

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 519  MATPPTXIVISTFLHFAPSFASDFFSCCVNC 427
            ++TPP     ST LHF   F+  FF+ C+ C
Sbjct: 1149 LSTPPPG---STDLHFPTQFSQPFFTQCMAC 1176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,301,527
Number of Sequences: 37544
Number of extensions: 291813
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)