Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20796
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40)               88   4e-18
SB_9817| Best HMM Match : PID (HMM E-Value=1.2e-20)                    88   4e-18
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)                   37   0.013
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    36   0.017
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_29317| Best HMM Match : Sushi (HMM E-Value=6.9e-26)                 29   3.4  
SB_35441| Best HMM Match : ResIII (HMM E-Value=0.078)                  28   4.5  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_25867| Best HMM Match : rve (HMM E-Value=4.4e-13)                   28   5.9  
SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         27   7.9  

>SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40)
          Length = 837

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
 Frame = +2

Query: 260 WQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQ 439
           W  K KG     G+ W+HAP+SL +  V Y VKF G T+V + KG EV+K+AI K+QF  
Sbjct: 7   WASK-KGK-QQEGKQWLHAPESLTQAAVLYTVKFYGVTEVAEAKGTEVIKEAITKVQFAN 64

Query: 440 QLKKSEA-KDGAKCKKVEITXSVGGVAIQEPRSNNIMYQF 556
            +KKSEA    +K +KV++  ++ GV+I++ +S  +++ +
Sbjct: 65  HIKKSEAGTKASKLRKVDLKINIDGVSIEDSKSKEVLHSY 104


>SB_9817| Best HMM Match : PID (HMM E-Value=1.2e-20)
          Length = 144

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
 Frame = +2

Query: 260 WQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQ 439
           W  K KG     G+ W+HAP+SL +  V Y VKF G T+V + KG EV+K+AI K+QF  
Sbjct: 7   WASK-KGK-QQEGKQWLHAPESLTQAAVLYTVKFYGVTEVAEAKGTEVIKEAITKVQFAN 64

Query: 440 QLKKSEA-KDGAKCKKVEITXSVGGVAIQEPRSNNIMYQF 556
            +KKSEA    +K +KV++  ++ GV+I++ +S  +++ +
Sbjct: 65  HIKKSEAGTKASKLRKVDLKINIDGVSIEDSKSKEVLHSY 104


>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
          Length = 1197

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 22/71 (30%), Positives = 41/71 (57%)
 Frame = +2

Query: 341 VAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSEAKDGAKCKKVEITXSVGGVAI 520
           V +  K LG  +V  P+G  +  DAIKKL+  QQ+K++    G   +K+ +  ++ G+ I
Sbjct: 42  VHFKCKLLGLKEVSGPRGDTICIDAIKKLK--QQIKQT----GEHKQKIIMAVNLRGIRI 95

Query: 521 QEPRSNNIMYQ 553
            + +S  ++Y+
Sbjct: 96  LDEKSKALVYE 106


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 305  WIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQ 430
            W H P+ L+KG V Y  ++LG   V +  G+    DA +K++
Sbjct: 1307 WHHEPEVLLKGSVNYTTQYLGSHMVKEISGVTSTIDACRKMR 1348


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 337  PRRLSR*VPRLHPS-RPAERHRGGQRCNQETTVHTATEEVRS 459
            P++ +   P  HP  +P E+H GG+   + T  H A +  ++
Sbjct: 1873 PKQATNETPNRHPEIKPQEQHLGGEGLQRPTNRHEAVDATQN 1914


>SB_29317| Best HMM Match : Sushi (HMM E-Value=6.9e-26)
          Length = 803

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 244 CRPCLLAG*GQRERGTERPQLD-PRSGLARQG 336
           CRPC     GQR RGTER   + PR G    G
Sbjct: 238 CRPCGANRVGQRMRGTERHARERPRYGQLETG 269


>SB_35441| Best HMM Match : ResIII (HMM E-Value=0.078)
          Length = 767

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 244 CRPCLLAG*GQRERGTERPQLDPRSGLARQG 336
           CRPC     G+R RGTER   + R  L+ QG
Sbjct: 59  CRPCGANSVGERMRGTERSARE-RFALSLQG 88


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 347  YLVKFLGCTQVDQPKGIEVVKDAIKKL 427
            +  KF+G T V++P G++++  AI K+
Sbjct: 1515 FTAKFVGSTDVNKPTGMDMLNKAISKV 1541


>SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 292 ERPQLDPRSGLARQGPRRLSR*VPRL---HPSRP 384
           +RPQL P  G   Q P  +S  VP+    HP +P
Sbjct: 273 QRPQLPPVGGFPGQAPPHMSTHVPQAGFPHPDQP 306


>SB_25867| Best HMM Match : rve (HMM E-Value=4.4e-13)
          Length = 341

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 293 SVPRSLCPYPARRQGRHSGVS 231
           SVPR LCP     QGRH+ VS
Sbjct: 309 SVPRILCPTLFAPQGRHNRVS 329


>SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 150 ADGDVPLVNSYLGSE----IEYGANGSKSGKTNSRMSTLSSGRVRAKG 281
           A+G  P+VN YL S     IE  +  +K     S+ S  +S R R KG
Sbjct: 85  AEGHYPVVNKYLSSPQCSVIEEPSKVTKENMLPSQASQEASDRAREKG 132


>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 422 KLQFTQQLKKSEAKDGAKCKKVEITXSVGGVA 517
           K Q T+  KK + K  +KCK++E+  S  GVA
Sbjct: 856 KEQATKGKKKGKKK--SKCKEIEVNQSAAGVA 885


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 460 ERWREMQESRN-NDXCGRCCHTGTTFEQYN 546
           E W+     +N ND  G+C H GT  +Q N
Sbjct: 501 EGWQGKNCDQNINDCAGQCKHNGTCIDQLN 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,021,859
Number of Sequences: 59808
Number of extensions: 320148
Number of successful extensions: 930
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)