Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20796
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death abno...    83   2e-16
AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate ada...    83   2e-16
AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    28   4.0  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    28   4.0  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    28   4.0  
AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe6...    28   4.0  
Z49126-4|CAD56565.1|  336|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death
           abnormality protein 6 protein.
          Length = 492

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
 Frame = +2

Query: 296 GRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSE-AKDGA 472
           GR WIH PD L+ GHV Y+ +FLGC +  +  G +V ++AI  ++F + LK+SE  ++ A
Sbjct: 44  GRTWIHPPDYLINGHVEYVARFLGCVETPKANGSDVAREAIHAIRFQRDLKRSEQTRETA 103

Query: 473 KCKKVEITXSVGGVAIQEPRSNNIMYQF 556
           K +KVEI  S+  V I + ++   MY F
Sbjct: 104 KLQKVEIRISIDNVIIADIKTKAPMYTF 131


>AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate
           adaptor protein CED-6 protein.
          Length = 492

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
 Frame = +2

Query: 296 GRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFTQQLKKSE-AKDGA 472
           GR WIH PD L+ GHV Y+ +FLGC +  +  G +V ++AI  ++F + LK+SE  ++ A
Sbjct: 44  GRTWIHPPDYLINGHVEYVARFLGCVETPKANGSDVAREAIHAIRFQRDLKRSEQTRETA 103

Query: 473 KCKKVEITXSVGGVAIQEPRSNNIMYQF 556
           K +KVEI  S+  V I + ++   MY F
Sbjct: 104 KLQKVEIRISIDNVIIADIKTKAPMYTF 131


>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 359 FLGCTQVDQPKGIEVVKDAIKKL 427
           FLG TQV +  GIE++ +A+ +L
Sbjct: 411 FLGVTQVPKATGIEILNEAVDRL 433


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 359 FLGCTQVDQPKGIEVVKDAIKKL 427
           FLG TQV +  GIE++ +A+ +L
Sbjct: 388 FLGVTQVPKATGIEILNEAVDRL 410


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 359 FLGCTQVDQPKGIEVVKDAIKKL 427
           FLG TQV +  GIE++ +A+ +L
Sbjct: 550 FLGVTQVPKATGIEILNEAVDRL 572


>AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform b protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 359 FLGCTQVDQPKGIEVVKDAIKKL 427
           FLG TQV +  GIE++ +A+ +L
Sbjct: 499 FLGVTQVPKATGIEILNEAVDRL 521


>Z49126-4|CAD56565.1|  336|Caenorhabditis elegans Hypothetical
           protein DH11.5c protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 147 MADGDVPLVNSYLGSEIEYGANGSKSGKTNSRMSTLSSGRVRAKGTG 287
           M  G+  ++N Y+   +    +G    K NS    +S+G V A G G
Sbjct: 1   MLSGNTTMMNDYIMFRLLVDDSGRHKQKRNSLQPPVSAGAVGAPGVG 47


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 394 HRGGQRCNQETTVHTATEEVRSERWREMQES 486
           HRGG+R  + +      EEVRS R   M ++
Sbjct: 217 HRGGERERRHSLPRVIIEEVRSRRGSRMSQT 247


>Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical
           protein W09D6.1b protein.
          Length = 714

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 513 TPPTXIVISTFLHFAPSFASDFFSCCVNCSFLI 415
           T    I+ ST LHF PS    F +  V C+ +I
Sbjct: 154 TSSDSILFSTSLHFDPSIVELFMAFHVGCTLII 186


>Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical
           protein W09D6.1a protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 513 TPPTXIVISTFLHFAPSFASDFFSCCVNCSFLI 415
           T    I+ ST LHF PS    F +  V C+ +I
Sbjct: 154 TSSDSILFSTSLHFDPSIVELFMAFHVGCTLII 186


>U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical
           protein C31H1.8 protein.
          Length = 567

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 392 GIEVVKDA-IKKLQFTQQLKKSEAKDGAKCKKVEITXSVGGVAIQEPRS 535
           GI+ ++D    +   ++  KK    DGA  +  E T SVG     EPRS
Sbjct: 470 GIQELEDGDAPEKSVSKYPKKRSIVDGASSETCEDTQSVGSSESSEPRS 518


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,765,885
Number of Sequences: 27780
Number of extensions: 229994
Number of successful extensions: 744
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)