Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20796
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family p...    31   0.52 
At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family p...    31   0.52 
At2g13960.1 68415.m01551 myb family transcription factor contain...    30   1.2  
At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5...    29   1.6  
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ...    29   2.8  
At5g63990.2 68418.m08034 3'(2'),5'-bisphosphate nucleotidase, pu...    27   6.4  
At5g63990.1 68418.m08035 3'(2'),5'-bisphosphate nucleotidase, pu...    27   6.4  
At3g63070.1 68416.m07084 PWWP domain-containing protein putative...    27   6.4  
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ...    27   6.4  
At3g08760.1 68416.m01018 protein kinase family protein contains ...    27   8.5  

>At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family
           protein (SRL1) contains Pfam profile PF03371: PRP38
           family
          Length = 385

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 6/110 (5%)
 Frame = +1

Query: 199 NMARTDRKAAKLTPECRPCLLAG*GQRE------RGTERPQLDPRSGLARQGPRRLSR*V 360
           +M R     A+  P  +  L    GQR       RG+   +  P +G  R G   + +  
Sbjct: 177 DMTRGSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVRRPPPTGYDRNGGDEVQQRS 236

Query: 361 PRLHPSRPAERHRGGQRCNQETTVHTATEEVRSERWREMQESRNNDXCGR 510
           PR   SR     R   R  +         E   +R+RE +    ND   R
Sbjct: 237 PRRSQSRDYYSDRDSDRQREREREKDRERERGRDRYRERERDYGNDRRSR 286


>At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family
           protein (SRL1) contains Pfam profile PF03371: PRP38
           family
          Length = 393

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 6/110 (5%)
 Frame = +1

Query: 199 NMARTDRKAAKLTPECRPCLLAG*GQRE------RGTERPQLDPRSGLARQGPRRLSR*V 360
           +M R     A+  P  +  L    GQR       RG+   +  P +G  R G   + +  
Sbjct: 185 DMTRGSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVRRPPPTGYDRNGGDEVQQRS 244

Query: 361 PRLHPSRPAERHRGGQRCNQETTVHTATEEVRSERWREMQESRNNDXCGR 510
           PR   SR     R   R  +         E   +R+RE +    ND   R
Sbjct: 245 PRRSQSRDYYSDRDSDRQREREREKDRERERGRDRYRERERDYGNDRRSR 294


>At2g13960.1 68415.m01551 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 150

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 376 SRPAERHRGGQRCNQETTVHTATEEVRSERWREMQESRNNDXCGRCCH 519
           S P  R +GG    ++ T+  A E+ + +RW+++ E        +C H
Sbjct: 68  SGPMRRAKGGWTPEEDETLRRAVEKYKGKRWKKIAEFFPERTQVQCLH 115


>At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5)
           contains Pfam profile: PF00249 myb-like DNA binding
           domain; identical to cDNA putative c-myb-like
           transcription factor MYB3R-5 (MYB3R5)  GI:15375300
          Length = 548

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 376 SRPAERHRGGQRCNQETTVHTATEEVRSERWREMQE 483
           S P  R +GG    ++ T+  A E+ + +RW+++ E
Sbjct: 68  SGPMRRAKGGWTPEEDETLRRAVEKYKGKRWKKIAE 103


>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
           YT521-B-like family protein low similarity to cleavage
           and polyadenylation specificity factor 30 kDa subunit
           [Bos taurus] GI:2327052; contains Pfam profiles PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar),
           PF04146: YT521-B-like family; supporting cDNA
           gi|24415581|gb|AY140901.1|
          Length = 678

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 24/84 (28%), Positives = 31/84 (36%)
 Frame = +1

Query: 259 LAG*GQRERGTERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHRGGQRCNQETTVHT 438
           + G G   RG       P +  AR GP        R  P R  ER   G + NQ+ +   
Sbjct: 590 MGGMGNAPRGGRPMYYPPATSSARPGPSN------RKTPERSDERGVSGDQQNQDASHDM 643

Query: 439 ATEEVRSERWREMQESRNNDXCGR 510
              EV +    E  ES + D   R
Sbjct: 644 EQFEVGNSLRNEESESEDEDEAPR 667


>At5g63990.2 68418.m08034 3'(2'),5'-bisphosphate nucleotidase,
           putative / inositol polyphosphate 1-phosphatase,
           putative similar to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana};
           contains Pfam profile PF00459: Inositol monophosphatase
           family
          Length = 298

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 269 KGKGNGAPNGRNWIHAPDSLVKGHV 343
           +GK  G P GR+WI  P    +G +
Sbjct: 120 RGKSEGGPKGRHWILDPIGGTRGFI 144


>At5g63990.1 68418.m08035 3'(2'),5'-bisphosphate nucleotidase,
           putative / inositol polyphosphate 1-phosphatase,
           putative similar to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana};
           contains Pfam profile PF00459: Inositol monophosphatase
           family
          Length = 357

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 269 KGKGNGAPNGRNWIHAPDSLVKGHV 343
           +GK  G P GR+WI  P    +G +
Sbjct: 120 RGKSEGGPKGRHWILDPIGGTRGFI 144


>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
            transcription factor HUA2, Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1347

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 361  PRLHPSRPAERHRGGQRCNQETTVHTATEEVRSERWREMQESRNN 495
            P  H  R  +RH+G  + +  +  H  +  +++ RW +   + NN
Sbjct: 1276 PSSHGPRYHDRHKGPHQSSSYSGHHRDSGRLQNNRWSDSPRAYNN 1320


>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 292 RCPVPFALTLPEDRVDI 242
           RC +PF  TLPED  D+
Sbjct: 648 RCKLPFVRTLPEDGADL 664


>At3g08760.1 68416.m01018 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 557

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 288 APFPLPLPCQKTGSTF--WS*FCRFSIRSRHIQSH-CLNNCLPMEHHRPPS 145
           +P PLPLP  +TGS+   W  F  F+  S  + S   ++  LP+    PPS
Sbjct: 112 SPQPLPLPSPRTGSSLKNWGSFKSFNGSSGRLSSSAAVSGPLPL----PPS 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,170,118
Number of Sequences: 28952
Number of extensions: 217316
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)