Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20794
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    69   6e-13
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 32/67 (47%), Positives = 41/67 (61%)
 Frame = +3

Query: 54  N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 233
           N LVPL++GAPD+A+PR+NN  F              + E G G G TVYPPLSS  +H 
Sbjct: 87  NYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHS 146

Query: 234 GRSVDLA 254
           G ++DLA
Sbjct: 147 GPAIDLA 153



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 34/83 (40%), Positives = 42/83 (50%)
 Frame = +2

Query: 260 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 439
           SL L GISS                   S  Q+PLF  A+ IT+          AG + +
Sbjct: 156 SLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFM 215

Query: 440 LLTDRNLNTSFFDPAGGGDPILY 508
           L +DRNLNTSF+ P GGGDP+LY
Sbjct: 216 LFSDRNLNTSFYAPEGGGDPVLY 238



 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 30/63 (47%), Positives = 38/63 (60%)
 Frame = +1

Query: 511 HLF*FFGHPEVYILILPGFGIISHIISQERGKKETFGCLGNNLCYTSNWVIRIHCFELHH 690
           HLF FFGHPEVYILI+P FG++SHII      K  FG  G      S  ++ +  +  HH
Sbjct: 240 HLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGLMVWS-HH 297

Query: 691 IFT 699
           +FT
Sbjct: 298 LFT 300


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 125 TPTPLPYIINFKKNCRKWCRNRMNS 199
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,073
Number of Sequences: 5004
Number of extensions: 39290
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)