Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20793
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.           27   0.15 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   1.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   3.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.6  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   9.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.6  

>U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.
          Length = 45

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 178 KLQDLVPFMPKNRKISKLEVIQ 243
           +L+D+VP +  +RK+SK E +Q
Sbjct: 19  RLRDVVPSLGNDRKLSKFETLQ 40


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 223 RSFYSWA*RVRDPGASRGTF 164
           R  Y W  +V   GAS GTF
Sbjct: 208 RQIYPWMRKVHVAGASNGTF 227


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 223 RSFYSWA*RVRDPGASRGTF 164
           R  Y W  +V   GAS GTF
Sbjct: 208 RQIYPWMRKVHVAGASNGTF 227


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 223 RSFYSWA*RVRDPGASRGTF 164
           R  Y W  +V   GAS GTF
Sbjct: 208 RQIYPWMRKVHVAGASNGTF 227


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +1

Query: 34  LPSVRVQ*LKMKAITAVCATGASVPAIA 117
           +P +++Q  + +++TA+  TG+ V  I+
Sbjct: 87  VPEIKIQISQQQSVTALLDTGSEVSCIS 114


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 279 TLIEGRRYIYNMLNHF*F---GDLSILGHE 199
           T+  GRRY + M+N F       L+I GH+
Sbjct: 337 TITPGRRYRFRMINSFASVCPAQLTIQGHD 366


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 279 TLIEGRRYIYNMLNHF*F---GDLSILGHE 199
           T+  GRRY + M+N F       L+I GH+
Sbjct: 337 TITPGRRYRFRMINSFASVCPAQLTIQGHD 366


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 344 SVAAAPPSEETARPSP 391
           + + APP EE A P+P
Sbjct: 42  AASPAPPEEEAASPTP 57


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 3   LTRIALRLYIFTQCSCSVTQDESDNSSV 86
           +TR  LR  + T  S SVT+D+  +SSV
Sbjct: 31  VTRRRLRRPLKTTQSVSVTKDQDVSSSV 58


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 397 PTPSSANHPPHTNTEIKRHQKNKTNLTG 480
           PTPS++  PP  N + +  Q      TG
Sbjct: 225 PTPSTSASPPTVNIKKESPQMQSYRPTG 252


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 323 LSVATLRSVAAAPPSEETARPSPYAQHHPPQITLHTRTQKS 445
           +S + + S AAAPP   T+  SP +        LH   +++
Sbjct: 22  ISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRA 62


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 403 PSSANHPPHTNTEIKRHQKNKTNLTGR 483
           P + + PP  N+ +  HQ   T+L G+
Sbjct: 121 PGATSQPPTDNSHVHHHQ---TSLLGK 144


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 188 SWSFERYICISAFSPSRC 135
           +W     IC+SA++P  C
Sbjct: 477 TWMPVMRICVSAWNPKDC 494


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 70  AITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSK 180
           A+T     G    +I    V + + G N EI MY+ +
Sbjct: 202 ALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRR 238


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 462 VFLVPFDFCVRVWRVICGGW 403
           +FLV F   +  W V  GGW
Sbjct: 124 LFLVIFVLNIWCWIVEIGGW 143


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = +1

Query: 397 PTPSSANHPPHTNTEIKRHQKNKTNLTGRRV 489
           P     +H PH N  +  +  N  N T   V
Sbjct: 34  PGLQGLHHSPHLNHAMHPYHANHVNPTANHV 64


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 137 CRCTRPLAIAGTEAP 93
           CR  R L +AGT +P
Sbjct: 251 CRDNRLLVLAGTSSP 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,097
Number of Sequences: 336
Number of extensions: 3045
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)