Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20793
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    29   0.84 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.6  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   4.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   5.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   5.9  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    26   5.9  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    26   5.9  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 350 AAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRKTK 466
           ++ P S ET + SP      PQI   T T+ SNGT + +
Sbjct: 115 SSVPSSTET-KASPTPLESKPQIVSDTTTETSNGTSRRR 152


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -2

Query: 227  LEIFLFLGMKGTRSWSFERYICISAFSPSRCRCTRPLAIAGTEAPVAHTAVIA 69
            L  FL  G +G    ++   ICI      +C+   P+ +AG E  +   A IA
Sbjct: 1297 LHEFLVQGYQGVDMHTYHNIICILIEKAEKCK-DEPVILAGIEDNITLIAEIA 1348


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 584 LPSVWSLPWQRWPL 543
           +P  W  PWQ WP+
Sbjct: 469 IPLDWDRPWQAWPI 482


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 396  PNTILRKSPSTHEHRNQTAPEKQNQPDRPSC*MQPRL 506
            P+++ R S S+        P K N+P +P   + PR+
Sbjct: 981  PSSLARSSVSSQRSSTSIIPIKPNKPTKPDHLVAPRV 1017


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 326 SVATLRSVAAAPPSEETARPSPYAQHHPP 412
           S A    V  APP   T  P+P  +HHPP
Sbjct: 720 SPAIKPQVTPAPP---TPAPTPAVKHHPP 745


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 295 LLDNLTLKAP*RRHLAQRRRSP 360
           LLDN+  KAP +R+LA    +P
Sbjct: 102 LLDNIKRKAPSKRNLANENTAP 123


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 103 VPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKN 213
           + A  SG      DG NA  + Y++   +LV F+PKN
Sbjct: 77  IGATVSGWAPGPLDGSNAAWREYITLDVNLVYFVPKN 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,654
Number of Sequences: 5004
Number of extensions: 51624
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)