Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20793
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17519| Best HMM Match : HLH (HMM E-Value=6e-08)                     37   0.018
SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)                      31   0.89 
SB_39365| Best HMM Match : HLH (HMM E-Value=5.5e-07)                   31   1.2  
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_17519| Best HMM Match : HLH (HMM E-Value=6e-08)
          Length = 125

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 21/63 (33%), Positives = 39/63 (61%)
 Frame = +1

Query: 67  KAITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQH 246
           +A+ A   + +S+   AS   +  RD  +   + Y  +L+++VP +P  R+ISK+E++Q+
Sbjct: 14  EALRATIRSASSITR-ASIFSEFERDSNDNMSECY-ERLKNMVPNVPVGRRISKVEILQY 71

Query: 247 VID 255
           VID
Sbjct: 72  VID 74


>SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)
          Length = 374

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 409 SANHPPHTNTEIKRHQKNKTNLTGRRVKCNL 501
           SA H P    E K+H++ K +L GR++K  L
Sbjct: 318 SAKHLPQKKPESKKHEQTKKDLKGRKLKRQL 348


>SB_39365| Best HMM Match : HLH (HMM E-Value=5.5e-07)
          Length = 105

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 127 VQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDISATFNQRWRIT 291
           + R R  E A I+  L+ L  L+P    NRK+SK  ++Q  I+   +  + + IT
Sbjct: 41  ISRQRKREYA-IREALNHLNSLLPLDNPNRKLSKNMILQTAIEYIRSLQEEFNIT 94


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 365 SEETARPSPYAQHHPPQITLHTRTQKSNGTRKTKP 469
           S+E +RPSP+A     Q +   RT   N   K+ P
Sbjct: 110 SQEQSRPSPFASQEHNQTSPFARTMDDNAPSKSSP 144


>SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -2

Query: 194 TRSWSFERYICI-SAFSPSRC-RCTRPLAIA 108
           TRSW+F+R++ I +   P +C +C +  A+A
Sbjct: 149 TRSWNFQRHVLIHTGQKPYKCQKCPKAFALA 179


>SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +2

Query: 368 EETARPSPYA----QHHPPQITLHTRTQKSNGTRKTK 466
           ++   P+P+     QHH P+ T HT  Q ++ T +TK
Sbjct: 340 DQGTHPTPWTRVHIQHHGPRYTSHTMDQGTHPTIRTK 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,680,591
Number of Sequences: 59808
Number of extensions: 403746
Number of successful extensions: 1326
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)