Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20793
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ...    30   1.3  
At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family...    30   1.7  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    30   1.7  
At1g56080.1 68414.m06439 expressed protein                             28   6.8  
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf...    27   9.0  
At3g24720.1 68416.m03104 protein kinase family protein protein k...    27   9.0  
At1g24145.1 68414.m03046 expressed protein                             27   9.0  

>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
           mays];  contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 820

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 335 TLRSVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSN 448
           T R + + PPS+    PSP   HH P + L       N
Sbjct: 240 TGRPMQSMPPSQPLINPSPMLPHHQPSLELDMSVYAGN 277


>At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family
           protein related to LENOD2 [Lupinus luteus]
           gi|296830|emb|CAA39050;  and genefinder
          Length = 302

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 397 PTPSSANHPPHTNTEIKRHQ 456
           P P S  HPPH NT+I  +Q
Sbjct: 82  PVPPSPGHPPHQNTKISVNQ 101



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 397 PTPSSANHPPHTNTEIKRHQ 456
           P P S  HPPH N +I  +Q
Sbjct: 168 PVPPSLKHPPHQNAKISMNQ 187



 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 397 PTPSSANHPPHTNTEIKRHQ 456
           P P S  HPPH N +I  +Q
Sbjct: 53  PVPPSPGHPPHQNAKISVNQ 72



 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 397 PTPSSANHPPHTNTEIKRHQ 456
           P P S  HPPH N +I  +Q
Sbjct: 111 PVPPSPGHPPHQNAKISVNQ 130


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 350 AAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRK 460
           A  PP      P P  Q HP    L+ R+ +SNG R+
Sbjct: 26  APLPPPPPLPPPPPPRQSHPESPNLYGRSTQSNGQRQ 62


>At1g56080.1 68414.m06439 expressed protein
          Length = 310

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +1

Query: 406 SSANHPPHTNTEIKRHQKNKTNLTGRRVKCNLG*AYLWLILINIPRSGQRCHGRLQTLGR 585
           S AN PP +++   RH +       R+ +  L        L NI     R  GR +TL +
Sbjct: 227 SVANSPPRSHSVSARHPRIDGKEFFRQARSRLSYEQFSAFLANIKELNARKQGREETLQK 286

Query: 586 TE 591
            E
Sbjct: 287 AE 288


>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
           PF03637: Mob1/phocein family; contains Pfam F00560:
           Leucine Rich Repeats; contains TIGRFAMS profile
           TIGR01612: reticulocyte binding protein; hypothetical
           protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
          Length = 1405

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +1

Query: 157 EIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDISATFNQRWRITQLLDN 306
           +++ Y  +++D   +  KN+  ++L++++H +D S T   R  I  L D+
Sbjct: 575 KLESYFDRVKDWKDYKGKNKNFAQLQLLEH-LDFSETKIIRLPIFHLKDS 623


>At3g24720.1 68416.m03104 protein kinase family protein protein
           kinase family; similar to tyrosine-protein kinase
           GB:P18160 from [Dictyostelium discoideum]
          Length = 297

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 471 PDRPSC*MQPRLSLFMVNINKYTSK--RPALPWEAPDAWENRSLRTSVPVKIIFR*YPMY 644
           P RP C +   L L  +  N   S   R  LPW AP+     S R S  V +      ++
Sbjct: 158 PQRPICKVGD-LGLSRIKRNTLVSGGVRGTLPWMAPELLNGSSTRVSEKVDVFSYGISLW 216

Query: 645 DLVT 656
           +++T
Sbjct: 217 EILT 220


>At1g24145.1 68414.m03046 expressed protein 
          Length = 128

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 123 SSAATPGWRKR*DTNVPLEAPGSRTLHAQE*KDLQIRSDSACYRYI-CDLQSALENHP 293
           S  ATPG   R      +E   S+T++  + +  QI+  S C  Y  C   S+L   P
Sbjct: 57  SKIATPGSTSRHSGQKNIEKEPSKTIYGHQLRPDQIKRGSPCKIYTRCKHSSSLPQPP 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,562
Number of Sequences: 28952
Number of extensions: 279820
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)