Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20792
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 83 3e-17
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 52 7e-08
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 46 5e-06
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 45 9e-06
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 43 3e-05
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 43 3e-05
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 42 5e-05
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 42 6e-05
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 42 6e-05
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 41 1e-04
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 41 1e-04
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 40 3e-04
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 39 4e-04
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 36 0.004
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 33 0.021
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 28 1.1
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 28 1.1
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 1.4
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.4
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy... 26 3.2
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 25 5.6
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 5.6
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 25 7.4
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 82.6 bits (195), Expect = 3e-17
Identities = 32/65 (49%), Positives = 52/65 (80%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKNG 453
KSALT+Q + F+++YDPTIED YRK+ E+D +L++LDTAG E++++MR+ Y++ G
Sbjct: 21 KSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTG 80
Query: 454 QGFVV 468
+GF++
Sbjct: 81 EGFLL 85
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 51.6 bits (118), Expect = 7e-08
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKNG 453
KS+LTVQ+V F+E Y PTIE+ + K I+ EI+DTAG ++++ + +
Sbjct: 19 KSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYSILNSKHSIGI 78
Query: 454 QGFVV 468
G+V+
Sbjct: 79 HGYVL 83
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 45.6 bits (103), Expect = 5e-06
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKNG 453
K+ L + F G F E Y PT+ + Y ++EVD L + DTAG E + +R L +
Sbjct: 19 KTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDS 78
Query: 454 QGFVVSIFINKPPNV 498
++ ++ P ++
Sbjct: 79 HVILICFAVDSPDSL 93
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 44.8 bits (101), Expect = 9e-06
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKNG 453
K+ L + F G F E Y PT+ + Y ++EVD L + DTAG E + +R L +
Sbjct: 19 KTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDS 78
Query: 454 QGFVVSIFINKPPNV 498
++ ++ P ++
Sbjct: 79 HVVLICFSVDAPESL 93
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 42.7 bits (96), Expect = 3e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDL 438
K++L F G F + Y+PTI + Y +I VD + L + DTAG E++ +R L
Sbjct: 26 KTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSL 80
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 42.7 bits (96), Expect = 3e-05
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKN 450
K+ L QFV+ F +Y TI DF K++ VD+ L++ DTAG E+F S+ + +
Sbjct: 21 KTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRG 80
Query: 451 GQGFVVSIFIN 483
V+ +N
Sbjct: 81 ADCCVIVYNVN 91
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 42.3 bits (95), Expect = 5e-05
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKNG 453
K+ L + + + F Y PT+ D Y + + + P L + DTAG E + +R L
Sbjct: 16 KTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 454 QGFVVSIFINKP 489
F+V + P
Sbjct: 76 DVFLVCFSVTSP 87
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 41.9 bits (94), Expect = 6e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEIL--DTAGTEQFASMRDLYIK 447
K+ L + F SG F E+Y PT+ + Y +I + V+E+ DTAG E++ +R L
Sbjct: 27 KTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDRLRPLSYP 86
Query: 448 NGQGFVVSIFINKPPNV 498
N ++ I+ P ++
Sbjct: 87 NSNVILLCFSIDCPASL 103
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 41.9 bits (94), Expect = 6e-05
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKN 450
KS L ++F + E Y TI DF + E++ L+I DTAG E+F ++ Y +
Sbjct: 21 KSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRG 80
Query: 451 GQGFVV 468
G ++
Sbjct: 81 AHGIII 86
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKN 450
K+++ Q+V+ F + Y TI DF KE+ VD+ L++ DTAG E+F S+ + +
Sbjct: 21 KTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRG 80
Query: 451 GQGFVVSIFIN 483
V+ +N
Sbjct: 81 ADCCVLVYDVN 91
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKNG 453
K++L F G F +Y PT+ + Y + VD L + DTAG E++ +R +
Sbjct: 21 KTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKA 80
Query: 454 QGFVVSIFINKPPNV 498
+V I+ P ++
Sbjct: 81 HIILVGFAIDSPDSL 95
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 39.5 bits (88), Expect = 3e-04
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKN 450
KS L ++F F + TI DF + IE+D L+I DTAG E+F ++ Y +
Sbjct: 22 KSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 81
Query: 451 GQGFVV 468
G ++
Sbjct: 82 AMGILL 87
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 39.1 bits (87), Expect = 4e-04
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDNSPCV-LEILDTAGTEQFASMRDLYIK 447
KS+L ++FV F + + TI F + + +D + V LEI DTAG E++ S+ +Y +
Sbjct: 27 KSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYR 86
Query: 448 NGQGFVVSIFINKPPNVFK 504
N +V I + ++ K
Sbjct: 87 NANCAIVVYDITQAASLEK 105
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 35.9 bits (79), Expect = 0.004
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKN 450
K++L +F+ F Y TI DF K + +++ L++ DTAG E+F S+ YI++
Sbjct: 24 KTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 83
Query: 451 GQGFVV 468
++
Sbjct: 84 SSVAII 89
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 33.5 bits (73), Expect = 0.021
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKN 450
KS L ++F F + TI +F + I +DN +I DTAG E++ ++ Y +
Sbjct: 23 KSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRG 82
Query: 451 GQGFVVSIFINK 486
G ++ I K
Sbjct: 83 AVGALIVYDITK 94
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIKN 450
K+ + ++G F +KY T+ + + + + DTAG E+ +RD Y
Sbjct: 22 KTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQ 81
Query: 451 GQ 456
GQ
Sbjct: 82 GQ 83
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 27.9 bits (59), Expect = 1.1
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +1
Query: 274 KSALTVQFVSGCFMEKYDPTIE-DFYRKEIEV----DNSPCVLEILDTAGTEQFASMRDL 438
KS L +FV + ++ T+ DF + I V L+I DTAG E+F S+
Sbjct: 22 KSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARN 81
Query: 439 YIKNGQGFVV 468
Y + G V+
Sbjct: 82 YYRGAAGAVL 91
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -2
Query: 363 FDFFSVEILYRRIIFFHKTS*YKLHSQRTLSDPTRTHTTTLNSRIIV 223
FD SV L+RR + + ++ K HS++ S+P+ L +R+ +
Sbjct: 104 FDHASVTSLHRRSLSSNTSTPRKYHSRKPYSEPSVIDKEHLQNRVSI 150
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 500 KTFGGLLMNILTTKP*PFFIYRSRIEANCSVPAVSKISKTQGELSTSIS 354
K F G+ +N + KP F ++ +N S+P + K S ST +S
Sbjct: 336 KIFAGVSLNFSSPKPAHRFYELNKTSSNLSIPVLQKPSNFHSS-STELS 383
>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 315 GKI*SDDRGFLQKRN-RSGQFSLCFRNF 395
G I DD+G LQK N ++G+ L F +F
Sbjct: 175 GSIHEDDKGLLQKDNLKNGEQVLLFNSF 202
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +2
Query: 338 RISTEKKSKWTILLVF 385
RIST+ KS+W +L+++
Sbjct: 98 RISTQDKSRWVLLIIW 113
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -1
Query: 352 FCR-NPLSSDHIFP*NILIQIAQS-THSFRPHPNPHDHFKFAHYCAP 218
+CR PLSS+H+ H+ PH PH HF +Y P
Sbjct: 146 YCRPEPLSSNHVRSCPPFPPTQHHHPHTRPPHHPPHPHFHNNNYPPP 192
>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 337 EDFYRKEIEVDN--SPCVLEILDTAGTEQFASMRDLYIKNG 453
+DFYRK+ ++DN S ++++ +F + D+ I G
Sbjct: 16 KDFYRKKSKIDNFRSRAAYKLIELNSKYRFINKEDVVIDVG 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,530
Number of Sequences: 5004
Number of extensions: 49701
Number of successful extensions: 139
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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