Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20790
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    33   0.017
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.48 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   4.5  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   4.5  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   4.5  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    24   7.8  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    24   7.8  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   7.8  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 33.1 bits (72), Expect = 0.017
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 55  MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDXAXRQSLEYESQGKGSII 210
           ++ A+AG+    LS +  N+D+  K+    L G Y  A      ++ QGKGS+I
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 180 FQALTXSXVVVAGEDAVVQFLLEVLV 103
           F  +T   V+V  EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 166 RQSLEYESQGKGSIIQNVVNNLIIDKRRNTWST 264
           ++S++ ES  K S  +NV+    +D +RN   T
Sbjct: 62  KESIKDESSAKSSETENVLEFATLDSKRNVNDT 94


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 311 VLSNNFLSVXDPQLVAVLHVFRLLSMIRLL 222
           VLS+ FL+   P L AVL   R +S   LL
Sbjct: 282 VLSSVFLAWHSPPLQAVLFCIRRISFFNLL 311


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 109 DLEEKLYNSILTGDYDXAXR 168
           DL  KL  S+ TGDYD A R
Sbjct: 127 DLLGKLQQSLGTGDYDVALR 146



 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 362 MILTIVSGHDESKV*WEVLSNNFLSVXDPQLVAVLHVFRLLSMIRLLTT 216
           +ILT +         W    N+FLS+ +   V VL +F+    +   T+
Sbjct: 549 VILTTIDAFKTVLDDWNFSENSFLSIKENLFVHVLSLFKAFESVDARTS 597


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 254 VFRLLSMIRLLTTFWMMEPLPWLSYSKL*RXALS*SPVRMLLYSFSS 114
           +F  L    +  T+ +  P P +S  K      S SP+R+ L SFSS
Sbjct: 120 LFGYLQSSGIQNTWGLHAPKPVISIIKKSHHLFSGSPLRLDLNSFSS 166


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 134 LLYSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILLKAFQI 3
           ++YS++S S +  SA  S   +L +   +AN   SF  L A  I
Sbjct: 465 VVYSYTSSSSMPSSAIPSFNISLISQNAVANAGNSFSPLSAMVI 508


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 119 SSRSWLEVSADSSTTPALAASMHI 48
           +S S+  V +DSSTTP +++S+ +
Sbjct: 318 TSDSFDSVLSDSSTTPTISSSVQV 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,287
Number of Sequences: 5004
Number of extensions: 24437
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)