Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20790
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   1.4  
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804...    27   4.3  
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113...    26   9.9  
02_02_0468 + 10633992-10634064,10635998-10636130,10636244-106363...    26   9.9  
02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437...    26   9.9  

>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -2

Query: 242 LSMIRLLTTFWMMEPLPWL-----SYSKL*RXALS*SPVRMLLYSFSSRSWLEVSADSST 78
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 77  TPALAASMHIANTTR 33
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


>04_01_0613 -
           8042568-8042686,8043107-8043206,8043550-8043594,
           8043691-8043770,8045082-8046322,8047077-8047507
          Length = 671

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/67 (20%), Positives = 29/67 (43%)
 Frame = +1

Query: 31  LLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDXAXRQSLEYESQGKGSII 210
           +LV   +     S  ++ + A  ++ ++ EKLYN +   +   +      Y   GK  I 
Sbjct: 196 MLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIA 255

Query: 211 QNVVNNL 231
            ++ N +
Sbjct: 256 HSIFNGM 262


>07_03_1732 +
           29109612-29110623,29110712-29110786,29111176-29111333,
           29111714-29111937,29112136-29112745
          Length = 692

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +1

Query: 115 EEKLY-----NSILTGDYDXAXRQSLEYESQGKGSIIQNVVNNLIID 240
           EEKLY     NS +   YD   +Q  + ES+GK  I+ +     + D
Sbjct: 407 EEKLYDEVKVNSAICRRYDEKCKQLRDQESRGKNQILVDFTRATVKD 453


>02_02_0468 +
           10633992-10634064,10635998-10636130,10636244-10636315,
           10637028-10637171,10637271-10637342,10637451-10637516,
           10637603-10637673,10637796-10637936,10638347-10638688,
           10638989-10639383,10639481-10639795
          Length = 607

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +1

Query: 121 KLYNSILTGDYDXAXRQSLEYESQGKGSIIQNVVNNLIIDKRRNTWSTATSCGSXTDRKL 300
           K+Y  +L      A ++  +YES G  +     V  + +   RN       C + T+R L
Sbjct: 297 KVYKGVLPDGTKIAVKRLTDYESPGGEAAFLREVELISVAVHRNLLKLIGFCTTQTERLL 356

Query: 301 L 303
           +
Sbjct: 357 V 357


>02_01_0590 +
           4376785-4377009,4378153-4378407,4378514-4378641,
           4378738-4378779,4378875-4378956,4379035-4379103,
           4379180-4379350,4379430-4379495,4379777-4379845,
           4379928-4380056,4380845-4380881,4380906-4380997,
           4381541-4381602,4381855-4381918
          Length = 496

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +1

Query: 70  AGVVELSADTSNQDLEEKLYNSILTGDY----DXAXRQSLEYESQGKGSIIQNVVNNLII 237
           +G+  L   ++ +D +E L ++I  G +    + A  + LE  +  +  +++ + +   I
Sbjct: 417 SGLHTLEQVSNCKDFDEYLKSAIQKGRFKVTVEGAEVEKLEVATPREKELLERIASLERI 476

Query: 238 DKRRNTWSTAT 270
           DKR N   TAT
Sbjct: 477 DKRSNVMPTAT 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,681,870
Number of Sequences: 37544
Number of extensions: 166071
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)