Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20790
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical pr...    26   9.0  
AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans Na/Ca,K-excha...    26   9.0  

>Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical
           protein ZK795.1 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 306 KYFPLNFRLIMAGNYXQDHLQK 371
           K  P+N R++M G Y  D  QK
Sbjct: 253 KELPINMRIVMIGRYQCDRFQK 274


>Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical
           protein F35C12.2a protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 292 RKLLESTSH*TLDSSWPETXVK 357
           + LLE      LD +WPET VK
Sbjct: 374 KSLLEEQEEKPLDMTWPETWVK 395


>AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans
           Na/Ca,K-exchanger protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 292 RKLLESTSH*TLDSSWPETXVK 357
           + LLE      LD +WPET VK
Sbjct: 374 KSLLEEQEEKPLDMTWPETWVK 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,994,539
Number of Sequences: 27780
Number of extensions: 136585
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)