Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20790
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    27   0.11 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.0  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = +1

Query: 40  VFAMCMLAASAGVVELSADTSNQDLEEKLYNS----ILTGDYDXAXRQSLEYESQGKGSI 207
           +FA CM   ++  +++  D     + + L  S    I++ D+D +     EY +  +   
Sbjct: 37  LFARCMGGINSRNMDIEHDPGLAAVLQYLIRSGQLNIISSDHDDSDE---EYAANSQPPR 93

Query: 208 IQNVVNNLIIDKRRNTWSTATSCG--SXTDRKLLESTS 315
           I +V N   +DK   + +T  +CG     D++ L  TS
Sbjct: 94  ITSVPNTSRLDKSEISLATKQACGFIDNIDKRNLSVTS 131


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 92  ADSSTTPALAASMHIANTTRSFI 24
           A+   +  +A  +HI+N T SF+
Sbjct: 396 ANKMESSGMAGRVHISNATLSFL 418


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 305 SNNFLSVXDPQLVAVLHVFRLLSMIRLL 222
           S +F  +   + + +L + +LLS++RLL
Sbjct: 193 SESFQILHAGRALRILRLAKLLSLVRLL 220


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 305 SNNFLSVXDPQLVAVLHVFRLLSMIRLL 222
           S +F  +   + + +L + +LLS++RLL
Sbjct: 193 SESFQILHAGRALRILRLAKLLSLVRLL 220


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 104 LEVSADSSTTPALAASMHIANTTRSFIL 21
           LE S   S +P      + +NT+++FIL
Sbjct: 80  LERSKTKSKSPESRDRSNTSNTSKTFIL 107


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 305 SNNFLSVXDPQLVAVLHVFRLLSMIRLL 222
           S +F  +   + + +L + +LLS++RLL
Sbjct: 193 SESFQILHAGRALRILRLAKLLSLVRLL 220


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 135 AVVQFLLEVLVRSVRG*FNDARAGGEHAHRKYN 37
           A V+  ++V++  + G  NDA   G      YN
Sbjct: 107 AGVRIYVDVIMNHMSGDRNDAHGTGNSRANTYN 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,935
Number of Sequences: 438
Number of extensions: 1969
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)