Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20790
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    31   0.29 
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    31   0.29 
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   0.68 
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr...    29   1.6  
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    29   1.6  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    29   1.6  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    28   2.1  
At4g15480.1 68417.m02366 UDP-glucoronosyl/UDP-glucosyl transfera...    28   2.7  
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    27   3.6  
At5g46130.1 68418.m05673 hypothetical protein contains Pfam prof...    27   6.3  
At4g24840.1 68417.m03558 expressed protein                             27   6.3  
At4g15490.1 68417.m02367 UDP-glucoronosyl/UDP-glucosyl transfera...    27   6.3  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    26   8.3  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +1

Query: 82  ELSADTSNQDLE-EKLY--NSILTGDYDXAXRQSLEYESQGKGSIIQNVVNNLIIDKRRN 252
           +L  +  NQ  E EKL+  NS L+  Y  +   S ++E+Q K  + QNV    ++DK R 
Sbjct: 285 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRT 344

Query: 253 TWSTATSCG 279
             + + S G
Sbjct: 345 EQAGSFSRG 353


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +1

Query: 82  ELSADTSNQDLE-EKLY--NSILTGDYDXAXRQSLEYESQGKGSIIQNVVNNLIIDKRRN 252
           +L  +  NQ  E EKL+  NS L+  Y  +   S ++E+Q K  + QNV    ++DK R 
Sbjct: 286 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRT 345

Query: 253 TWSTATSCG 279
             + + S G
Sbjct: 346 EQAGSFSRG 354


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 55  MLAASAGVVELSADTSNQDLEEKLYNSILTGDYD 156
           +LA + G  ELS   + Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103


>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 613

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 121 KLYNSILTGDYDXAXRQSLEYESQGKGSIIQNVVNNLIIDKRRNTWSTATSCGSXTDRKL 300
           K+Y  +L  +   A ++  ++ES G  +  Q  V  + +   RN       C + T+R L
Sbjct: 303 KVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLL 362

Query: 301 L 303
           +
Sbjct: 363 V 363


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 121 KLYNSILTGDYDXAXRQSLEYESQGKGSIIQNVVNNLII 237
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 121 KLYNSILTGDYDXAXRQSLEYESQGKGSIIQNVVNNLII 237
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = -1

Query: 276  TACSSTPCVPSLVNDQVVNYILDDGXXXXXLIFQALTXSXVVVAG---EDAVVQFLLEVL 106
            T C+      S  N QVV  ++         I    T   VVVAG    DA+V   L+V 
Sbjct: 2385 TTCAEAMAATSAGNAQVVPLLMKAIGWLGGSILALETLKRVVVAGNRARDALVAQGLKVG 2444

Query: 105  VRSVRG*FNDARAGGEH---AHRKYNE 34
            +  V     D R GG +   +H K+NE
Sbjct: 2445 LIEVLLGLLDWRTGGRYGLSSHMKWNE 2471


>At4g15480.1 68417.m02366 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 297 FPVRXRPTACSSTPCVPSLVNDQVVNYI 214
           FP    P      PCVP L ND++ +++
Sbjct: 174 FPTETEPELDVKLPCVPVLKNDEIPSFL 201


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 258 EYCYKLWVGNGQEIVRKYFPLNF 326
           EY  KL + +G +   KYFPL F
Sbjct: 396 EYQLKLMIASGVDAANKYFPLAF 418


>At5g46130.1 68418.m05673 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 376

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +1

Query: 46  AMCMLAASAGV-VELSADTSNQDLEEKLYNSILTGDYDXAXRQSLEYESQGKGSIIQNVV 222
           AM M    +GV + +  +TS +D++    N         +   S+      KGS IQN+ 
Sbjct: 80  AMSMGLNQSGVNIHMKENTSLRDMDNVRLNIYYKPSDPKSKSVSVHLPPLPKGSQIQNIA 139

Query: 223 NNLIIDKRRNTWSTA 267
              + D + + W  A
Sbjct: 140 MTSLPDLKNDDWVVA 154


>At4g24840.1 68417.m03558 expressed protein
          Length = 756

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 282 GNGQEIVRKYFPLNFRLIMAGNYXQDHLQKLQPRSEAR 395
           G+  EI R+Y+ L   ++      Q  LQKL+  ++ R
Sbjct: 655 GSVSEITRRYYELAADVVSVARKTQSSLQKLRQNAQRR 692


>At4g15490.1 68417.m02367 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase ;simalr to
           UDP-glucose:sinapate glucosyltransferase GI:9794913 from
           [Brassica napus]
          Length = 479

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 300 QFPVRXRPTACSSTPCVPSLVNDQVVNYI 214
           +FP +  P      PC+P L +D++ +++
Sbjct: 161 KFPTKTEPDISVEIPCLPLLKHDEIPSFL 189


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 29  NFSLYLRCACSPPARASLN 85
           NF+L LRC  +PP ++ LN
Sbjct: 252 NFTLDLRCVLNPPQQSLLN 270



 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 29  NFSLYLRCACSPPARASLN 85
           NF+L LRC  +PP ++ LN
Sbjct: 556 NFTLDLRCVLNPPPQSLLN 574


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,612,446
Number of Sequences: 28952
Number of extensions: 130012
Number of successful extensions: 337
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)