Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20789
         (571 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    27   0.085
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    27   0.085
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    27   0.085
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    24   0.79 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.8  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   5.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.4  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.4  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 27.5 bits (58), Expect = 0.085
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 324 DSIVRCRAAGIRVIVITGDNKSTAEAICRRIGVFGEDEDTTGKSF 458
           D I RC A G+R+ V T  N  T        G  G   D  GK++
Sbjct: 97  DMISRCNAVGVRIYVDTVINHMTGMG---GTGTAGSQADRDGKNY 138


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 0.085
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 324 DSIVRCRAAGIRVIVITGDNKSTAEAICRRIGVFGEDEDTTGKSF 458
           D I RC A G+R+ V T  N  T        G  G   D  GK++
Sbjct: 98  DMISRCNAVGVRIYVDTVINHMTGMG---GTGTAGSQADRDGKNY 139


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 0.085
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 324 DSIVRCRAAGIRVIVITGDNKSTAEAICRRIGVFGEDEDTTGKSF 458
           D I RC A G+R+ V T  N  T        G  G   D  GK++
Sbjct: 98  DMISRCNAVGVRIYVDTVINHMTGMG---GTGTAGSQADRDGKNY 139


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 210 GVIGRGQGQATQRIATSTVLAG 145
           G+I  G+GQ TQR+    ++ G
Sbjct: 14  GIISGGRGQNTQRVQNQPLVIG 35


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = -1

Query: 517 SLGQALRCSAMGRSSNS---RPEKD-LPVVSSSSPNTPIRLQMASAVDLLSP 374
           SL Q L   ++G   +    +P+   L   S   PN+P+   M     LLSP
Sbjct: 9   SLDQNLSMGSLGAPQSPLDMKPDASTLGQFSPQGPNSPVSFSMGGHGSLLSP 60


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 105 SSDHDPEEPHLGPDPP 152
           +S HD   P  GP PP
Sbjct: 266 ASQHDLGSPSSGPAPP 281


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = +3

Query: 345 AAGIRVIVITGDNKSTAEAICRRIGVFGEDEDTTGKSFSGREFDDLPIAEQRSAWPRLAC 524
           + G+R    + DN S  E+      ++G    T  ++     F D PI E+  +     C
Sbjct: 3   SGGLRNDTYSDDNFSDDESSPLTENIYGGSTRTVQETKGWDVFRDPPIKEESGSMANQKC 62


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = +3

Query: 345 AAGIRVIVITGDNKSTAEAICRRIGVFGEDEDTTGKSFSGREFDDLPIAEQRSAWPRLAC 524
           + G+R    + DN S  E+      ++G    T  ++     F D PI E+  +     C
Sbjct: 3   SGGLRNDTYSDDNFSDDESSPLTENIYGGSTRTVQETKGWDVFRDPPIKEESGSMANQKC 62


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = +3

Query: 345 AAGIRVIVITGDNKSTAEAICRRIGVFGEDEDTTGKSFSGREFDDLPIAEQRSAWPRLAC 524
           + G+R    + DN S  E+      ++G    T  ++     F D PI E+  +     C
Sbjct: 3   SGGLRNDTYSDDNFSDDESSPLTENIYGGSTRTVQETKGWDVFRDPPIKEESGSMANQKC 62


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = +3

Query: 345 AAGIRVIVITGDNKSTAEAICRRIGVFGEDEDTTGKSFSGREFDDLPIAEQRSAWPRLAC 524
           + G+R    + DN S  E+      ++G    T  ++     F D PI E+  +     C
Sbjct: 3   SGGLRNDTYSDDNFSDDESSPLTENIYGGSTRTVQETKGWDVFRDPPIKEESGSMANQKC 62


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = +3

Query: 66  RTLHTRSRRHQQGSSDHDPEEPHLGPDPPVRY 161
           RT+  R R             PH GP  P+ Y
Sbjct: 163 RTIKKRLRSCDLCQKTKSSNRPHQGPLTPILY 194


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 101 LLVPTRACVQRSSTPS 54
           +L+PT  C + SS+P+
Sbjct: 189 ILLPTPTCSEASSSPT 204


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,220
Number of Sequences: 336
Number of extensions: 2981
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)