Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20789
         (571 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    26   0.75 
AB107248-1|BAE72063.1|  278|Anopheles gambiae Bcl-2 family prote...    24   3.0  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   5.3  
AY390608-1|AAR27305.1|  242|Anopheles gambiae SP22D protein.           23   7.0  
AY390607-1|AAR27304.1|  242|Anopheles gambiae SP22D protein.           23   7.0  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   7.0  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   9.3  
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    23   9.3  

>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-signaling
            promoter protein.
          Length = 1197

 Score = 26.2 bits (55), Expect = 0.75
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 559  DLRLVRGLHAREQASLGQALRCSAMGRSSNSRPEKDLPVVSSSSPNT 419
            +L LVRG+       +G   RCS    SS S    +    SSSS N+
Sbjct: 1064 ELHLVRGVRLGSGTLVGALNRCSNGSCSSTSSSHSNHSSHSSSSSNS 1110


>AB107248-1|BAE72063.1|  278|Anopheles gambiae Bcl-2 family protein
           Anob-1 protein.
          Length = 278

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 38  LSREHPKVYSNVAHTLAS 91
           L R HP++YSNV+  +++
Sbjct: 128 LERMHPRLYSNVSRQISN 145


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -1

Query: 493 SAMGRSSNSRPEKDLPVVSSSSPNTPIRLQMASAVDLLSPVMTITRIPAARQRTIESKTS 314
           SA+ R  +   +  LP    +  N+P+        +LLS   T    PAA   T  S T+
Sbjct: 440 SALVRGMDLMDDMPLPYHDHNHHNSPMS---PINFNLLSAASTAVPNPAATNATANSTTT 496

Query: 313 LRGG 302
             GG
Sbjct: 497 GAGG 500


>AY390608-1|AAR27305.1|  242|Anopheles gambiae SP22D protein.
          Length = 242

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 81  RSRRHQQGSSDHDPEEPHLGPDPPV 155
           + ++HQQ    H P  P   P  P+
Sbjct: 21  QQQQHQQQQQQHGPSGPQYQPGVPL 45


>AY390607-1|AAR27304.1|  242|Anopheles gambiae SP22D protein.
          Length = 242

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 81  RSRRHQQGSSDHDPEEPHLGPDPPV 155
           + ++HQQ    H P  P   P  P+
Sbjct: 21  QQQQHQQQQQQHGPSGPQYQPGVPL 45


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 194 PRPITPSNPTKWILVTPPNSNLRSQP 271
           P P T   P   I + PP  N+  +P
Sbjct: 64  PNPFTAGPPKPNISIPPPTMNMPPRP 89


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 411 RIGVFGEDEDTTGKSFSGREFDDLPIAEQR 500
           +I V  +DE    +   G  FD+LP A  R
Sbjct: 785 KIPVAEDDEGYEEQDTPGETFDELPTASAR 814


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 291 GMLDPPRKEVFDSIVRCRAAGIRVIVITGDNKSTAEAICRRIGV 422
           G+LD    EV + +   +AAG     ++  +K+    + +++GV
Sbjct: 133 GLLDERYLEVLEGLKEAQAAGHLHSSVSEKSKTVPVPVFQKVGV 176


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,206
Number of Sequences: 2352
Number of extensions: 14371
Number of successful extensions: 34
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53824896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)