Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20789
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.13 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.53 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.70 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 169 DTLRCLALATADNPLKPDEMDLGDST 246
           DTLR +A     NPL PD +DL   T
Sbjct: 900 DTLRKIAQNRGTNPLAPDAVDLTQLT 925



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 244 WSHQDPFRRV*GGYRPWPGP 185
           WS+QD  + +  GYR  P P
Sbjct: 842 WSNQDVIKSIEKGYR-LPAP 860


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 309 RKEVFDSIVRCRAAGIRVIV 368
           R++  D + RC  AG+R+ V
Sbjct: 94  REQFIDMVARCNKAGVRIYV 113


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 9   LAPRQRTQTICQGSTRRCTRTLHTRSRRHQQGSSDHDPEE 128
           +A    T  +  G+T   TR L  R +   +G+ D D +E
Sbjct: 245 VATSNATAAMTTGTTTIPTRRLRKRRQNDGEGADDRDDDE 284


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 162 STVLAGQVQDAVLQGRG 112
           S+V +GQ Q +VLQG G
Sbjct: 820 SSVQSGQQQQSVLQGLG 836


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 54  RRCTRTLHTRSRRHQQGSSDHDPEEPHLGPDPPVRYWSR 170
           R C+R      ++ ++    H+ EE HL      R +SR
Sbjct: 251 RSCSRDRSREYKKDRRYDQLHNVEEKHLRERTSRRRYSR 289


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 252 EFGGVTKIHFVGFEGVIG 199
           EF     +HFVGF G  G
Sbjct: 64  EFFDQMGVHFVGFVGQYG 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,615
Number of Sequences: 438
Number of extensions: 4076
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)