Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20788
         (411 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.0  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   6.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    20   8.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 256  WSTATSCGSATDRKLLESTSH*TLDSSWP 342
            W+T T+  + T R    ST+     ++WP
Sbjct: 1052 WTTTTTRRTTTTRPTTTSTTTRPTTTNWP 1080


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 163 VRQSLEYESQGKGSIIQNVVNNLIIDKRRNT 255
           V   L+   +G    I  V+++ ++D R+NT
Sbjct: 144 VHDILQPGVKGLHGPITRVIDSKVVDSRKNT 174


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 89  PRTLLTKTSRRNCTTASSPATTTV 160
           PR++ T T     +T++SP T  +
Sbjct: 215 PRSVATPTGIPTPSTSASPPTVNI 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,374
Number of Sequences: 336
Number of extensions: 1726
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)