Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20788
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804...    29   1.9  
02_02_0468 + 10633992-10634064,10635998-10636130,10636244-106363...    28   3.3  
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    27   5.8  
04_04_0018 - 22178972-22179179,22179264-22179502                       27   5.8  
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113...    27   7.7  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    27   7.7  

>04_01_0613 -
           8042568-8042686,8043107-8043206,8043550-8043594,
           8043691-8043770,8045082-8046322,8047077-8047507
          Length = 671

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = +1

Query: 67  SAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKR 246
           S  ++ + A  ++ ++ EKLYN +   +   +      Y   GK  I  ++ N +   K 
Sbjct: 208 SCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPA-KD 266

Query: 247 RNTWSTATSCGSATDRKLLES 309
             +WS A   G A   K +E+
Sbjct: 267 VVSWS-AMIAGYAESSKPMEA 286


>02_02_0468 +
           10633992-10634064,10635998-10636130,10636244-10636315,
           10637028-10637171,10637271-10637342,10637451-10637516,
           10637603-10637673,10637796-10637936,10638347-10638688,
           10638989-10639383,10639481-10639795
          Length = 607

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 121 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTWSTATSCGSATDRKL 300
           K+Y  +L      AV++  +YES G  +     V  + +   RN       C + T+R L
Sbjct: 297 KVYKGVLPDGTKIAVKRLTDYESPGGEAAFLREVELISVAVHRNLLKLIGFCTTQTERLL 356

Query: 301 L 303
           +
Sbjct: 357 V 357


>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = -2

Query: 242 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 78
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 77  TPALAASMHIXNTTR 33
            P   A+  +  TTR
Sbjct: 96  VPTTTAAARVAATTR 110


>04_04_0018 - 22178972-22179179,22179264-22179502
          Length = 148

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 44  LXCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVR 172
           L CAC+PP R +      +  +   R   +AS    T  L VR
Sbjct: 18  LSCACAPPTRGTRRRRLAVAVRVRVRVRASASEAMATEKLGVR 60


>07_03_1732 +
           29109612-29110623,29110712-29110786,29111176-29111333,
           29111714-29111937,29112136-29112745
          Length = 692

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +1

Query: 115 EEKLY-----NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIID 240
           EEKLY     NS +   YD   +Q  + ES+GK  I+ +     + D
Sbjct: 407 EEKLYDEVKVNSAICRRYDEKCKQLRDQESRGKNQILVDFTRATVKD 453


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 261 YCYKLWV-GNGQEIVRKYFPLNFRLIMARKLCQ--DHLQKLQP 380
           Y ++LW  GN  E++ K+F  ++ L  A   CQ  D L   +P
Sbjct: 720 YAWRLWKDGNATELLDKFFVDSYPLHEAFSFCQSDDRLTPAKP 762


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,823,132
Number of Sequences: 37544
Number of extensions: 210890
Number of successful extensions: 630
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)