Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20788
         (411 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   28   3.4  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        27   4.5  
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)                     27   4.5  
SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_44762| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  
SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_44316| Best HMM Match : Exo_endo_phos (HMM E-Value=0.14)            27   7.9  

>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 59   SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKAR 199
            +PP+R S    R+     SR    T S+P T +  S RA + R KA+
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAK 1404


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +2

Query: 110 TSRRNCTTASSPATTTVLS------VRAWNMRAKARAP 205
           TSR NC   + P +T ++S      +R W+ R++++ P
Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692


>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
          Length = 672

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/76 (22%), Positives = 30/76 (39%)
 Frame = -1

Query: 258 PCVPSLVNDQVVNYILDDGXXXXXLIFQALTDSTVVVAGEDAVVQFLLEVLVRSVRG*FN 79
           PC   L+N + +N  L DG     L F    +    ++G+  V+ +      R       
Sbjct: 446 PCAAGLLNRKHLNIWLSDGNTLGKLHFDPFENFLCQISGKKQVILYEPHDNTRLYEAHIQ 505

Query: 78  DARAGGEHAHXKYNEK 31
           ++     HAH ++  K
Sbjct: 506 ESMLEYNHAHKEFRRK 521


>SB_52307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 285 NGQEIVRKYFPLNFRLIMARKLCQDHLQKLQP 380
           N  E++ +YF   F L    K  QD+L  L+P
Sbjct: 134 NSSEVIPRYFQSQFGLRFDDKRWQDNLSSLKP 165


>SB_44762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 244 RRNTWSTATSCGSATDRKLL 303
           R+ +W+T  SCG ATD   L
Sbjct: 337 RKASWATTISCGKATDSMTL 356


>SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 224 LTTFWMMEPLPWLSYSKL*RTALS*SPVRMLLYSFSSRSWLEVSA 90
           +  F  ++PL  L+YS+  RTA+   P    ++ +  R+W E  A
Sbjct: 185 VVNFEPLKPLFMLAYSRS-RTAIPAGPALPNIFGYPHRNWKEAGA 228


>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 324 FRLIMARKLCQDHLQKLQPRSEXRFHN 404
           FRL M  K  Q+HLQK +  S+ R  N
Sbjct: 812 FRLPMGTKTVQEHLQKSKHFSKPRMSN 838


>SB_44316| Best HMM Match : Exo_endo_phos (HMM E-Value=0.14)
          Length = 404

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 300 QFPVRCRPTACSSTPCVPSLV 238
           +F  +CRP  C S  C  SLV
Sbjct: 25  EFEFKCRPEICFSDTCAESLV 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,208,907
Number of Sequences: 59808
Number of extensions: 237844
Number of successful extensions: 664
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)