Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20788
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    33   0.11 
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    28   2.3  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    28   2.3  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    28   2.3  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    26   9.2  
U80023-9|AAG24041.1|  257|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 50  CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 205
           CA +  A ++LNY RT L+    +NC     P TT + +  A N    + AP
Sbjct: 38  CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 108 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 218
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 108 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 218
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 108 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 218
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical protein
            T16G12.1 protein.
          Length = 1890

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 103  NQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNN 228
            N DL++ +  SIL+GDY  ++  S+         +   +++N
Sbjct: 1764 NLDLQKTMLRSILSGDYPPSLLNSIAVHDDSSDVLYNFLLDN 1805


>U80023-9|AAG24041.1|  257|Caenorhabditis elegans Hypothetical
           protein F07C4.10 protein.
          Length = 257

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 349 SFLAMMSLKFNGKYFLTISCPLPTHSL*QYSMCSVSC 239
           SFL  ++ K NG Y  + S    T  + +YS  +VSC
Sbjct: 12  SFLNSVNGKVNGDYNCSYSVTFSTPDVWRYSPSAVSC 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,893,316
Number of Sequences: 27780
Number of extensions: 173519
Number of successful extensions: 530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)