Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20785
         (718 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7QEW9 Cluster: Chromosome chr16 scaffold_86, whole gen...    36   1.00 
UniRef50_A6LJI4 Cluster: Imidazolonepropionase; n=2; Thermotogac...    33   7.0  

>UniRef50_A7QEW9 Cluster: Chromosome chr16 scaffold_86, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr16 scaffold_86, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 142

 Score = 35.9 bits (79), Expect = 1.00
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +1

Query: 13  TRRSSVLYESDLFNTFVLLYVVNRLFVILHSGDYRYI 123
           T++ ++L  SDLF+TF L Y+++ LF I HS ++ YI
Sbjct: 96  TQKCNILRVSDLFSTFSLSYLISSLFFI-HSLEHEYI 131


>UniRef50_A6LJI4 Cluster: Imidazolonepropionase; n=2;
           Thermotogaceae|Rep: Imidazolonepropionase - Thermosipho
           melanesiensis BI429
          Length = 398

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -2

Query: 171 VLKQNIIYKIRFKKSKNVTIVTTVQYHKQSINNVKQYKSIKKITFIQD 28
           ++KQNI Y   FK++    I     Y  + IN +KQ KSI  +  IQD
Sbjct: 115 IVKQNIDYLKIFKRNGICAIEGKSGYGLEKINELKQLKSITVLNEIQD 162


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,990,662
Number of Sequences: 1657284
Number of extensions: 9828517
Number of successful extensions: 18519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18515
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)