Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20785
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory recep...    28   5.8  
AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF125958-1|AAD14729.1|  342|Caenorhabditis elegans Serpentine re...    28   7.7  

>U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory receptor
           family protein 5 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 1   LRSPTRRSSVLYESDLFNTFVLLYVVNRLFVILHSGDYRY 120
           LRS TR+    Y+   +  F++LYV+  LF +++SG Y +
Sbjct: 138 LRSKTRK---FYDGARW--FIILYVITTLFNVVYSGKYYF 172


>AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6b protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 645 TTRVCAQNLVTKSIATGEYSYTKHCLYLECI 553
           T  +C +N+  K++  G  +  +HC  L+CI
Sbjct: 212 TCGICMENIFEKNLRFGILNGCQHCFCLDCI 242


>AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6a protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 645 TTRVCAQNLVTKSIATGEYSYTKHCLYLECI 553
           T  +C +N+  K++  G  +  +HC  L+CI
Sbjct: 212 TCGICMENIFEKNLRFGILNGCQHCFCLDCI 242


>AF125958-1|AAD14729.1|  342|Caenorhabditis elegans Serpentine
           receptor, class j protein9 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 144 IRFKKSKNVTIVTTVQYHKQSINNVKQYKSIKKITFIQDT 25
           IRF+    + ++T   ++  S+  +  +K ++KIT +Q T
Sbjct: 194 IRFRSWLGIFLLTAFSFYAMSVYIILGFKIMRKITLMQST 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,815,603
Number of Sequences: 27780
Number of extensions: 258006
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)