Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20785
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    23   2.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.8  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 229 RIKYYTSSKFDNFTK*VGL 285
           R K Y+S  FD+F K +G+
Sbjct: 8   RYKLYSSENFDDFMKALGV 26


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 412 YHSLLNLTGFMMSRYLGNNSILSVFT 489
           Y S+L +  F M RYL     L V+T
Sbjct: 126 YVSVLTIVAFSMERYLAICHPLRVYT 151


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 293 SNQF*SVFGVIHIKHHNESSTQSRYV 370
           S ++ S + + H++   ESS +  Y+
Sbjct: 431 SGRYYSAYSLHHVRSSRESSCEQTYI 456


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,423
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)