Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20783
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   3.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   4.7  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    26   6.2  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 142 KGFDWRAVVDFGLYNNLEKVEMEVYFEKEI 231
           KGF W A+  FG+++N   ++++ +FEK +
Sbjct: 438 KGF-WYAI-SFGVFSNCFSLQLQSFFEKHL 465


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 172 NPLLLASQIPLHCRNILYPNRKDYTLSELVRIRTWYSHFLLNTRKKRNINK 20
           NP    +   L+C  +L   R    L+E + +  W+  F  + RKKRN+ K
Sbjct: 85  NPETAPASEALNCIRLL--TRIIPFLNEKLDLEEWHQKFWWSLRKKRNLPK 133


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 250 VMPYLFLFPFRNKLPFQLFLNYCIVRNPLLLASQIPLHCRNILYPNRKDYTLSEL 86
           V  ++F FPF   LP +  +  C+ R   +  S+      NIL     D  L+++
Sbjct: 13  VSAFVFHFPFLEALPSKFEIYACLERRATVTQSKARSAYPNILVYTNLDELLADV 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,181
Number of Sequences: 5004
Number of extensions: 63340
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)