Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20783
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0172 + 18903601-18903661,18903792-18904009                       31   0.91 
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042...    29   3.7  
07_03_1115 - 24076506-24076677,24077169-24077266,24077622-240777...    29   3.7  
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    28   6.4  
03_01_0035 - 322993-323280,323385-323528,324055-324180,324827-32...    28   8.5  

>01_05_0172 + 18903601-18903661,18903792-18904009
          Length = 92

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -3

Query: 578 PRATANPLPLLQSLQRSIRYFPGTSATYMSISFSTIIFV-----CYVVGACFLSGL 426
           P     P+P L +L   +      S +  S++ S++  +     C+++G CFLSGL
Sbjct: 22  PPPPGTPVPFLVALHLRLAACGAQSTSTSSVAASSVSLLAEPGHCFIIGNCFLSGL 77


>11_06_0061 -
           19702893-19703869,19703960-19704098,19704166-19704287,
           19704362-19704416,19704508-19704624,19704718-19705413,
           19706358-19706393,19707190-19708236
          Length = 1062

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +2

Query: 527 LTSVRTEAKAGDWPWHVAILIRQPKSVIGVYNCGGTIISRRAVLTAGHCLF 679
           L   R +   G+W    A +  QPK  + VY  G  +  RR     GH  F
Sbjct: 179 LVRPRRDYVGGEWVPSEAAIALQPKQAVRVYQVGDKVEVRRDREVYGHSWF 229


>07_03_1115 -
           24076506-24076677,24077169-24077266,24077622-24077743,
           24079059-24079235,24079809-24079897,24079919-24079965,
           24080423-24080519,24080600-24080682,24080716-24080796,
           24081043-24081199,24081323-24081750,24081985-24082014,
           24083180-24083300,24083432-24083697
          Length = 655

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 452 RHNKQI*WWKKICSCMWPKSLENTELTSVRTEAKAGD 562
           RHN++I +WK  CS +W + L  +E+ S       GD
Sbjct: 479 RHNEKIGFWKTNCSELWER-LHISEVPSSAPSDSEGD 514


>02_05_0602 + 30283893-30284170,30286259-30286305,30286534-30287510,
            30287611-30287920,30288561-30290197
          Length = 1082

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 575  RATANPLPLLQSLQRSIRYFPGTSATYMSISF 480
            R  AN     +S+ R +   P  SATYMS+ F
Sbjct: 1051 RGDANAKQAAESILRRLHKMPDYSATYMSVEF 1082


>03_01_0035 -
           322993-323280,323385-323528,324055-324180,324827-324882,
           325497-325517,327153-327420,327904-329787
          Length = 928

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
 Frame = -1

Query: 535 RGQFGIFQGLRPHT*AY-----LFPPLYLFVMS*EPVFC-LALISSLQRITLLMENIVTT 374
           +GQFG   GL+PH         + P +     S   V C L+++ ++Q  TLL+ + VT+
Sbjct: 726 QGQFG---GLQPHLLQIDAGEEIIPKITALSKSNGRVICVLSVLGAVQEATLLLSSGVTS 782

Query: 373 GTSFPLE-FRIFRS 335
               PLE  R+F S
Sbjct: 783 YHKGPLEIIRLFGS 796


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,295,517
Number of Sequences: 37544
Number of extensions: 369332
Number of successful extensions: 824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)