Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20783
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18580.1 68414.m02317 glycosyltransferase family protein 8 co...    31   1.0  
At1g55930.1 68414.m06415 CBS domain-containing protein / transpo...    30   1.3  
At5g41960.1 68418.m05109 expressed protein                             29   3.1  
At1g50420.1 68414.m05651 scarecrow-like transcription factor 3 (...    29   4.1  
At1g47765.1 68414.m05312 F-box family protein contains F-box dom...    29   4.1  
At1g01980.1 68414.m00116 FAD-binding domain-containing protein s...    28   5.4  
At3g03480.1 68416.m00346 transferase family protein similar to h...    27   9.4  

>At1g18580.1 68414.m02317 glycosyltransferase family protein 8
           contains Pfam profile PF01501: Glycosyl transferase
           family 8; protein sequence is truncated due to a
           frameshift.  This could be a pseudogene or a sequencing
           error may exist.
          Length = 332

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 592 TTKISYRCLQLWW-NHHFKESSFDSRSLSIYEW 687
           T ++SY+ +Q W+ ++ FK S+ + RS+  + W
Sbjct: 265 TNRVSYKAMQAWFLSNDFKGSAIEIRSVEEFSW 297


>At1g55930.1 68414.m06415 CBS domain-containing protein /
           transporter associated domain-containing protein
           contains Pfam profiles PF00571: CBS domain, PF03471:
           Transporter associated domain, PF01595: Domain of
           unknown function
          Length = 653

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = -1

Query: 637 DGSTTIVNTYN*FWLSYQYSHVP 569
           DGS ++V+ +N FW+++QYS VP
Sbjct: 364 DGSGSLVDFHN-FWVTHQYSRVP 385


>At5g41960.1 68418.m05109 expressed protein 
          Length = 217

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = -3

Query: 572 ATANPLPLLQSLQRSIRYFPGTSATYMSISFSTIIFVCYVVGACFLSGLDFIITKNHFVD 393
           ++ +PLPL   LQ   +             FS    +   +GAC LS   F + K    +
Sbjct: 30  SSPSPLPLAYPLQNPKKLCRKIERVICRAEFSQDAPLVTAIGACILSSFVFPVAKRVNDE 89

Query: 392 GEHRYDGYIVST 357
            E   +  IVST
Sbjct: 90  EEEEENSAIVST 101


>At1g50420.1 68414.m05651 scarecrow-like transcription factor 3
           (SCL3) identical to GB:AAD24404 GI:4580515 from
           [Arabidopsis thaliana] (Plant J. 18 (1), 111-119 (1999))
          Length = 482

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 208 PFQLFLNYCIVRNPLLLASQIPLHCRNILYPNRKDYTLSELV 83
           P Q+F    + R P LLAS  P HC   L P  +   L  L+
Sbjct: 18  PLQVFSTMSLNR-PTLLASSSPFHCLKDLKPEERGLYLIHLL 58


>At1g47765.1 68414.m05312 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 385

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 244 PYLF-LFPFRNKLPFQLFLNYCIVRNPLLLASQIPLHCRNILYPNRKDYTLSELVRIRTW 68
           PY   LF  R+  P  L    C + N  L  S IP H  + L  +++ Y+ S+L  +  W
Sbjct: 60  PYFINLFETRSPRPSLLV---CFIENDKLFVSSIPQHLHS-LQNSKRSYSSSQLFIVIIW 115


>At1g01980.1 68414.m00116 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 541

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -1

Query: 394 MENIVTTGTSFPLEFRIFRSNVKRSCKGPIGRIII*CQLFLTTTKVVFVMPYLFLFPFRN 215
           M  + TT T FP   R+F+     + K P G  +     F+  T+      Y ++ PF  
Sbjct: 417 MSEVATTATPFPHRKRLFKVQHSMNWKDP-GTDVE--SSFMEKTRSF----YSYMAPFVT 469

Query: 214 KLPFQLFLNY 185
           K P   +LNY
Sbjct: 470 KNPRHTYLNY 479


>At3g03480.1 68416.m00346 transferase family protein similar to
           hypersensitivity-related gene GB:CAA64636 [Nicotiana
           tabacum]; contains Pfam transferase family domain
           PF00248
          Length = 454

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 229 FPFRNKLPFQLFLNYCIVRNPLLLASQIPLHCRNILYPNRKDYTLSE 89
           FPF  +L F +  +  ++  PLLL     L C   ++  R ++T+++
Sbjct: 132 FPFLEELLFDVEGSSDVLNTPLLLVQVTRLKCCGFIFALRFNHTMTD 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,286,561
Number of Sequences: 28952
Number of extensions: 319069
Number of successful extensions: 794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)