Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20781
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   3.9  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   5.2  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   6.8  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   6.8  

>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 410 TVLNKNEFLTGISNPNEEYFSEEK 481
           TV  +N FL GIS  +  YFSE++
Sbjct: 720 TVPEENTFLIGISVNSHVYFSEDE 743


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 410 TVLNKNEFLTGISNPNEEYFSEEKCLIKFRLNVY 511
           T LN    L  ++NP+   FS EKCL++     Y
Sbjct: 127 TFLNAR-LLQIVNNPSARKFSNEKCLLQLTRKGY 159


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 368 YF*LCQKYPS*ISFTVLNKNEFLTGISNPNEEYFSE 475
           Y  + +K+PS I   +    + L  +SNPNEE F E
Sbjct: 537 YVSILEKHPSFIDARI---RKCLLQLSNPNEETFKE 569


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 297 RFTMFSNIK*FFTEEILINFYFLNNQILYYLYNFIVN 187
           R + F++    F E+ L+NF F  N     +YN + N
Sbjct: 475 RLSQFASQSPLFREQFLLNFDFTYNLSESEVYNTVFN 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,912
Number of Sequences: 5004
Number of extensions: 33362
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)