Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20781
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    27   6.9  
03_02_0849 - 11768191-11771412                                         27   9.1  

>09_06_0371 +
           22615809-22617431,22618312-22618422,22619361-22619453,
           22619562-22619661,22619754-22619834,22620774-22621047,
           22621254-22622069,22622921-22623029,22623509-22623602,
           22623881-22623939,22624150-22624197
          Length = 1135

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 261 TEEILINFYFLNNQILYYLYNFIVNPYLINYSQ*GSEISILSLEIML 121
           +E + +N Y  N  + + LY FI NP  I     G  I +++  +M+
Sbjct: 684 SESLRVN-YISNKDMRFGLYEFIFNPQCIPCHASGDFIIVVTTRVMI 729


>03_02_0849 - 11768191-11771412
          Length = 1073

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 257 SVKNHFMLLNIVNRQTITTLNFIYHSNKYFATKFLKQYF*LCQKYP 394
           ++ N   +LN  N + + +L   YH   Y     LKQ F LC  +P
Sbjct: 397 NISNQMRILNEDNNRILPSLQISYHHLPY----HLKQLFTLCCLFP 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,552,662
Number of Sequences: 37544
Number of extensions: 145782
Number of successful extensions: 203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)