Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20781
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57183| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)                 29   1.8  
SB_16106| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)            27   9.4  

>SB_57183| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)
          Length = 533

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 25  NDDVIVHLLKYVWQGKLICTVAYIIFL-YD 111
           ND  I+ +L  VW G ++  + Y+IFL YD
Sbjct: 135 NDIFIIFVLFLVWIGSVLSVIPYVIFLNYD 164


>SB_16106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 422 KNEFLTGISNPNEEYFSEEKCLIKFRLNVYV 514
           +NE  T +S  N EY      ++KFRL V V
Sbjct: 209 RNEIKTTMSTANREYSENSSMIMKFRLRVLV 239


>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
          Length = 936

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 327  YIKFSVVIVCRFTMFSNIK*FFTEEILINFYFLNNQILYYLYNFIVN 187
            Y+   +++   F  F  +   F  ++ ++FYFL    + YL  FIV+
Sbjct: 870  YLLHPIILFAYFASFKTL--MFYSDVNVSFYFLAALCVAYLCAFIVS 914


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,104,483
Number of Sequences: 59808
Number of extensions: 190824
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)