Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20781
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical p...    27   8.1  

>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
           protein B0240.3 protein.
          Length = 1093

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 258 EEILINFYFLNNQIL--YYLYNFIVNPYLINYSQ*GSEISILSL 133
           EE +I+        L  YYLY  I N  L NY Q    IS +S+
Sbjct: 211 EETIISLQMYEGYHLLGYYLYTAITNTTLFNYVQPEKAISSMSI 254


>Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical
           protein Y57G11C.37 protein.
          Length = 837

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -1

Query: 339 LFEWYIKFSVVIVCRFTMFSNIK*FFTEEILINFYFLNNQILYYLYNF 196
           +  + I + +  +C   MF+ +   FT + L +FYF ++ +L +L  F
Sbjct: 349 VMRYVITYPITFLCVVGMFAAMLAIFTVQDLADFYFGDSWMLSWLCYF 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,723,731
Number of Sequences: 27780
Number of extensions: 173483
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)