Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20779
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   7.6  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   7.6  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    25   10.0 
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    25   10.0 
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    25   10.0 

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 255  QWDLLKKLE*NVTIGLSLETDHSFMHRI 338
            +W  L ++  N T GL +ET H F+ R+
Sbjct: 1064 KWQELLQIRDNPTHGLLVETKHPFIKRV 1091


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 255  QWDLLKKLE*NVTIGLSLETDHSFMHRI 338
            +W  L ++  N T GL +ET H F+ R+
Sbjct: 1064 KWQELLQIRDNPTHGLLVETKHPFIKRV 1091


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 612  IFNPLKFPTFYCL*GTFYLGR 550
            +F+P++FP    L G FY GR
Sbjct: 1296 VFSPIEFPFVLELIGEFYYGR 1316


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 608 NMKTVCLRMPVWWGT*TTKCCL 673
           N+    LR+P WW   TT  CL
Sbjct: 72  NLVIYALRVPNWWPCKTTVVCL 93


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 547 PPPQIKRPLKTVEGGKLQWIKYEDSMPKNASLVGDMN 657
           P P+++RP   V  G L+  +  +S+    S+  D N
Sbjct: 53  PTPRVQRPATDVSYGALEETEENESIASGLSVQEDFN 89


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 550 VVIQTSSVQVLYFCHRKCEIIKILFFALQ 464
           V+I  + V++LY CH     I IL F ++
Sbjct: 161 VIIAVAMVKILYICHWLIYKILILAFGIK 189


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 550 VVIQTSSVQVLYFCHRKCEIIKILFFALQ 464
           V+I  + V++LY CH     I IL F ++
Sbjct: 161 VIIAVAMVKILYICHWLIYKILILAFGIK 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,317
Number of Sequences: 5004
Number of extensions: 62526
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)