Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20779
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_37538| Best HMM Match : zf-CCHC (HMM E-Value=0.0011)                28   6.0  
SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)                   28   7.9  

>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 510 QKYSTCTLEV*ITTAPNKTSPKDSRRWETSMD*I*RQYA*ECQFGGGHEPRNVV 671
           Q+  T T+E     AP KT+P+ ++R+ET  +   RQ    C + G   PR  +
Sbjct: 798 QESKTATIERVGLRAPGKTAPQYAQRFETKSE--RRQPPDRCGYCGRDHPRGKI 849


>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/45 (24%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
 Frame = +2

Query: 356 HTPNIISNSEYRQFSISW-SKNGVCLGQNGELE--PIMKLECKEQ 481
           H PN++SN++   F   + +++ +C+G++G++    +M++  K++
Sbjct: 16  HLPNVLSNADKEDFFKHFGARSVICMGRSGKMSCFAVMRMSPKKE 60


>SB_37538| Best HMM Match : zf-CCHC (HMM E-Value=0.0011)
          Length = 215

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 510 QKYSTCTLEV*ITTAPNKTSPKDSRRWETSMD*I*RQYA*ECQFGGGHEPRNVV 671
           Q+  T T+E     AP KT+P+ ++R ET      RQ    C++ G   PR  +
Sbjct: 35  QESKTATIERVGLRAPGKTAPQYAQRSETKSQ--RRQPPDRCEYCGRDHPRGKI 86


>SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)
          Length = 351

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 266 AKEAGMKCDYWVVLGDRSFI 325
           A+E  MKC Y+V  GD SF+
Sbjct: 183 AEEDKMKCTYYVPFGDTSFV 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,309,896
Number of Sequences: 59808
Number of extensions: 429659
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)