Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20779
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17740.1 68416.m02264 expressed protein                             29   2.8  
At1g03990.1 68414.m00385 alcohol oxidase-related low similarity ...    28   6.6  

>At3g17740.1 68416.m02264 expressed protein
          Length = 1149

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 368 IISNSEYRQFSISWSKNGVCLGQNGELEPIMKLECKEQN 484
           +   S+ R F   WS NG  +G+ G    ++ LE +E+N
Sbjct: 472 LTEQSKLRLFEHFWSSNGARVGEEGAFGWLLWLEKEEEN 510


>At1g03990.1 68414.m00385 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]; Location
           of EST 248L9T7, gb|AA713296
          Length = 758

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 195 HIFYKVNSSSINFEVKADNAQWDLLKKLE*NVTIGL 302
           HIF  V    +  EVK D  ++ L K  E N+TIGL
Sbjct: 593 HIFAMVRDEGVG-EVKGDIVKYRLTKADEENLTIGL 627


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,060,298
Number of Sequences: 28952
Number of extensions: 313194
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)