Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20777X
(365 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.30
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 0.69
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 4.9
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans... 25 4.9
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 25 4.9
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 4.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 4.9
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 25 4.9
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 24 6.4
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 24 6.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 6.4
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 24 6.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 24 8.5
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 24 8.5
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 24 8.5
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 8.5
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 8.5
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.30
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 356 VHKLNRVFGEDKSELNWETIPDDVL 282
+H + EDKS+L +ETIPD VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 0.69
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 112 QLYNSVVVADYDSAVEKSKHLYEEKKS 192
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 222 DTKQQDELHGVAYQLWLQGSKDIVRDCFPVEFRLI 326
DT++ ELH + +L+ K V D FP + +I
Sbjct: 753 DTEKVTELHQILKPFFLRRVKSEVLDNFPTKVEVI 787
>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
transporter Hut1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 24.6 bits (51), Expect = 4.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 281 GALEPKLIGYSMQFILLFRISLFTTFVMTSLFFSSY 174
G LEPK +GY + SL + F S+F SY
Sbjct: 70 GLLEPKFLGYFSS--IAISASLSSYFGYASMFHLSY 103
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 147 VVIGDDDAIVKLLLQNVVRDVGICSIQ 67
VVIGD+ I K +L N V+ CSI+
Sbjct: 371 VVIGDNCRIGKAILANSVKIGNNCSIE 397
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 297 PGRCPWSPGAKVDRLLHAVHLVVSYQFVHDI 205
P + PW PG K++ V Y+ +H+I
Sbjct: 70 PSKIPWLPGGKINADEKLVADPSVYEMLHNI 100
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.6 bits (51), Expect = 4.9
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 271 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSA 363
S P T S + S LSS SSP T LS+ +S+
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSS 598
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 4.9
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 103 LEEQLYNSVVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 243
LE L + +VA S++EKSK LY+ K ++ +VV R ++MN
Sbjct: 279 LEYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 24.2 bits (50), Expect = 6.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 6 RTRRSKDEARYSYSMSFRGIS 68
RTR + EAR SY RG++
Sbjct: 491 RTRNLRKEARLSYYTKLRGVN 511
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 82 SDVPNDILEEQLYNSVVVADYDSAVEKSKHLY 177
S +P I E Q + + EKSKHLY
Sbjct: 129 SHIPGMITENQTNDDAKEVNGSDVDEKSKHLY 160
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 6.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 80 IPTSLTTFWRSSFTIASSSPITT 148
+P + T S++TI+SS+P+T+
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTS 524
Score = 24.2 bits (50), Expect = 6.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 80 IPTSLTTFWRSSFTIASSSPITT 148
+P + T S++TI+SS+P+T+
Sbjct: 561 VPYTSTPVTSSNYTISSSTPVTS 583
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 24.2 bits (50), Expect = 6.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 250 E*PINFGSRAPRTSSGIVSQLSSDLSS 330
E P+N G A G++S LSS LSS
Sbjct: 928 EPPLNSGKPALSKEGGLLSALSSYLSS 954
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 23.8 bits (49), Expect = 8.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 103 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN 234
LEE + V+ + A+ SK + ++ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 159 FNRTVVIGDDDAIVKLLLQNVVRDVG 82
FNR ++ DD VK + + +D+G
Sbjct: 707 FNRASILDPDDWYVKYFIATLEKDMG 732
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 151 AVEKSKHLYEEKKSEVITNVVNKL-IRNN 234
A+E+ + Y ++ E +TN++N++ RNN
Sbjct: 845 ALEQIRVHYLIRRCEALTNIINRISFRNN 873
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 23.8 bits (49), Expect = 8.5
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 130 VVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCME*PINFGSRAPRTSS 294
V A+ + AV KH+ V VVN+ + K N + P +F T S
Sbjct: 27 VTAEDEKAVTNKKHINSSATVHVFHGVVNRTFK-TKGNTVGLPKSFSKAVIETLS 80
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 23.8 bits (49), Expect = 8.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 362 ALVHKLNRVFGEDKSELNWETIPDDVLGAL 273
+L HK+N+V +L+ +I DDVL A+
Sbjct: 1050 SLRHKMNKVMLSVLEQLDVASIQDDVLIAI 1079
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,395,817
Number of Sequences: 5004
Number of extensions: 23882
Number of successful extensions: 113
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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