Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20777X
         (365 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)                 28   2.0  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_34480| Best HMM Match : DUF988 (HMM E-Value=3.4)                    27   6.2  
SB_31867| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)              27   6.2  
SB_2745| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.2  
SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)                 27   6.2  
SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)                    27   6.2  
SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)                 26   8.1  
SB_24253| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)                     26   8.1  

>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
          Length = 453

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 184 KKSEVITNVVNKLIRNNKMNCME*PINFGSRAPRTSSGIVSQLSSD 321
           K+  ++TN+ +  I  N++N  +  INF  R     S + +++SSD
Sbjct: 214 KEKMILTNLKSPRITANQLNVYKNQINFLKRMFELQSALEAEVSSD 259


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 77  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 208
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 77  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 208
           +IPTS     R SFT+    P + VR  R S +T  RR  +S++
Sbjct: 146 RIPTSRVRQTRLSFTMVRRIPTSRVRQTRLS-FTMVRRIPTSRV 188


>SB_34480| Best HMM Match : DUF988 (HMM E-Value=3.4)
          Length = 223

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 362 ALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLIGYSMQFIL 234
           +LV  L   FG+  + L    +  D LG L+P L+GY + + +
Sbjct: 98  SLVRALINAFGKGYAALGLFPLFADGLGILQPILLGYLVTYFV 140


>SB_31867| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
          Length = 674

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 362 ALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLIGYSMQFIL 234
           +LV  L   FG+  + L    +  D LG L+P L+GY + + +
Sbjct: 18  SLVRALINAFGKGYAALGLFPLFADGLGILQPILLGYLVTYFV 60


>SB_2745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 264 VDRLLHAVHLVVSYQFVHDIC 202
           +DRL++  HLV +Y FV++ C
Sbjct: 87  IDRLVNTDHLVNTYHFVNNDC 107


>SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 139 DYDSAVEKSKHLYEEKKSE 195
           DYD ++EK  HL+++K+ +
Sbjct: 189 DYDRSLEKDAHLHDDKRDD 207


>SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)
          Length = 414

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 49  CLFVASLYA-ADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 195
           CL  ++ Y   DS VP +  +    +   V  YD+  + ++ +Y +KK E
Sbjct: 175 CLTHSACYLKGDSPVPENTNDAYTNSRYAVRQYDALQQLTRIIYTDKKKE 224


>SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)
          Length = 950

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 114 LLLQNVVRDVGICSIQRCHEKT*NNYSGLHLWSVESC 4
           LL +N V+DV    ++   EK  N+ S  +LW  ++C
Sbjct: 105 LLEENAVKDV--LQVESASEKPKNDTSARYLWKNDNC 139


>SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)
          Length = 649

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 101 FWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*T 217
           FW  +FT+A  + I    LKRA +    + AK  Q + T
Sbjct: 564 FWFYAFTLAFQAFIFDQSLKRAEVVASMKIAKKQQKTRT 602


>SB_24253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 52  LFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSK 168
           L  +  Y  D D+ +DI++EQ Y      D   AV++ K
Sbjct: 81  LIESEYYNMDKDLQSDIMDEQEYFEKKAEDVGVAVDELK 119


>SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +1

Query: 100 ILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNC 246
           +++ +    VV A Y + V +++ LY  +   ++ +V+ K+  NN+M C
Sbjct: 231 VIQARYVRIVVQAWYTNIVMRAE-LYGCEGKRLVEHVIRKVTGNNQMQC 278


>SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)
          Length = 171

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 109 EQLYNSVVVADYDSAVEKSKHLYEEKKSEVIT 204
           ++L  S + A  D A+EK KHL +    +++T
Sbjct: 65  KELATSAISAAKDLAIEKGKHLIDRTSVKMLT 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,510,867
Number of Sequences: 59808
Number of extensions: 183780
Number of successful extensions: 628
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)