Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20777X
(365 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 30 0.44
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 30 0.44
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 28 1.8
AF016448-17|AAB65962.1| 656|Caenorhabditis elegans Hypothetical... 28 2.4
U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical pr... 27 4.1
AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical... 27 4.1
AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical... 27 4.1
AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical... 27 4.1
AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical... 27 4.1
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 27 4.1
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 27 5.4
U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set (trithorax/... 26 7.2
U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical pr... 26 7.2
AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas... 26 7.2
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal... 26 7.2
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal... 26 7.2
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal... 26 7.2
AC006642-6|AAF39829.1| 146|Caenorhabditis elegans Hypothetical ... 26 9.5
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 139 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 249
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 139 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 249
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +1
Query: 265 FGSRAPRTSSGIVSQLSSDL--SSPKT 339
FG APRT SG + Q S++L S+PKT
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKT 171
>AF016448-17|AAB65962.1| 656|Caenorhabditis elegans Hypothetical
protein F41E6.14 protein.
Length = 656
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 266 KLIGYSMQFILLFRISLFTTFVMTSLFFSS 177
++ GYS+ I+LF L T F ++ F +S
Sbjct: 163 RIFGYSLAIIILFLFQLLTPFELSYCFLAS 192
>U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical
protein C03F11.3 protein.
Length = 563
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -1
Query: 284 LGALEPKLIGYSMQFILLFRISLFTTFVMTSLFFSSYK 171
LGAL +G I LF +S FTT + L FS YK
Sbjct: 194 LGALIEGELG---TLISLFNVSPFTTVTVDQLLFSGYK 228
>Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical
protein F36F2.3b protein.
Length = 363
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 113 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 211
SFT+ASS P T +R+++ S + + + + S
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 317
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
F36F2.3a protein.
Length = 1128
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 113 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 211
SFT+ASS P T +R+++ S + + + + S
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 1082
>Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical
protein C38C10.3 protein.
Length = 301
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 277 APRTSSGIVSQLSSDLSSPKTRLSL 351
A + SSG+VSQ+SS SS + R +L
Sbjct: 91 AVKNSSGLVSQISSTTSSERKRRTL 115
>AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical
protein Y47D3A.17d protein.
Length = 449
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 362 ALVHKLNRVFGEDKSELNWETIPD 291
AL+H+ + E K + NWE PD
Sbjct: 424 ALIHQFKGGYWEAKEQQNWEKCPD 447
>AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical
protein Y47D3A.17c protein.
Length = 842
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 362 ALVHKLNRVFGEDKSELNWETIPD 291
AL+H+ + E K + NWE PD
Sbjct: 817 ALIHQFKGGYWEAKEQQNWEKCPD 840
>AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical
protein Y47D3A.17b protein.
Length = 627
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 362 ALVHKLNRVFGEDKSELNWETIPD 291
AL+H+ + E K + NWE PD
Sbjct: 602 ALIHQFKGGYWEAKEQQNWEKCPD 625
>AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical
protein Y47D3A.17a protein.
Length = 766
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 362 ALVHKLNRVFGEDKSELNWETIPD 291
AL+H+ + E K + NWE PD
Sbjct: 741 ALIHQFKGGYWEAKEQQNWEKCPD 764
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 46 LCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 195
LC F + DV EE+L + VAD+ V++ K +E+ E
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKE 431
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 26.6 bits (56), Expect = 5.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 177 RGEEERSHHKCREQTDTK---QQDELHGVAYQLWLQGSKDIVRDCFPVEFRLIFA 332
R EE+ K R QT T+ Q+ E+ ++ L+ S+D+ RDC ++ FA
Sbjct: 41 RIEEKVLEIKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVCIDMDAYFA 95
>U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 19
protein.
Length = 944
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 136 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCME*PINFGSRA---PRTSSGIVS 306
+DY S + +E T +NK++ N + +E P G+R PRT I +
Sbjct: 756 SDYSSVLNSPASTSQESTGMRDTQRLNKVLSKNNIGELESPRLNGTRVLSPPRTRHQISN 815
Query: 307 QLSSD 321
+ SD
Sbjct: 816 AIDSD 820
>U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical
protein B0495.8a protein.
Length = 313
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 79 DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 216
DS + N + +++ ADY+ A ++ H Y+ E+I + V+
Sbjct: 49 DSRLQNVVSCRKVHEPAHKADYERAQKEKDHFYDVDAFEIIEHAVH 94
>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
protein.
Length = 1237
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 156 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 55
N +++GD AI L +Q+ VR +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667
>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane
calcium atpase protein3, isoform b protein.
Length = 1234
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 156 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 55
N +++GD AI L +Q+ VR +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667
>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane
calcium atpase protein3, isoform a protein.
Length = 1160
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 156 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 55
N +++GD AI L +Q+ VR +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667
>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane
calcium atpase protein3, isoform c protein.
Length = 1137
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 156 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 55
N +++GD AI L +Q+ VR +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667
>AC006642-6|AAF39829.1| 146|Caenorhabditis elegans Hypothetical
protein F49H12.3 protein.
Length = 146
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 96 VRDVGICSIQRCHEKT*NNYSGLHLWSVESC 4
+RD IC +Q C K +NY L SC
Sbjct: 101 LRDQAICMLQLCSNKNDSNYINEMLAKSTSC 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,729,006
Number of Sequences: 27780
Number of extensions: 135146
Number of successful extensions: 577
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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