Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20777X
(365 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 33 0.044
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 29 0.72
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 2.9
At1g59077.1 68414.m06670 hypothetical protein 27 2.9
At1g58766.1 68414.m06659 hypothetical protein 27 2.9
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 27 2.9
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 3.8
At5g58860.1 68418.m07375 cytochrome P450 86A1 (CYP86) (CYP86A1) ... 27 5.0
At5g47690.1 68418.m05887 expressed protein 27 5.0
At4g28590.1 68417.m04089 expressed protein 27 5.0
At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recogniti... 27 5.0
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890... 27 5.0
At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative / phos... 26 6.7
At1g70400.1 68414.m08098 hypothetical protein similar to U4/U6 s... 26 6.7
At4g09870.1 68417.m01616 F-box family protein contains Pfam PF00... 26 8.8
At3g23010.1 68416.m02901 disease resistance family protein / LRR... 26 8.8
At3g09130.1 68416.m01074 hypothetical protein 26 8.8
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF... 26 8.8
At1g15320.1 68414.m01833 hypothetical protein 26 8.8
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 33.5 bits (73), Expect = 0.044
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 10 LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 189
+D + P+ +I+ + V +L S +P D+L++ L D DSA +K E K
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213
Query: 190 SEVITNV 210
+ N+
Sbjct: 214 GSIAPNL 220
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 29.5 bits (63), Expect = 0.72
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 280 PRTSSGIVSQLSSDLSSPKTRLSLCTS 360
PR +G S L SDL P+T + CTS
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTS 197
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 103 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 210
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 103 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 210
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 103 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 210
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.5 bits (58), Expect = 2.9
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +2
Query: 56 SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 151
+W + +L +P ++ FW + +ASS + +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 120 VKLLLQNVVRDVGICSIQRCH 58
+K ++N+++ G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747
>At5g58860.1 68418.m07375 cytochrome P450 86A1 (CYP86) (CYP86A1) /
CYPLXXXVI / P450-dependent fatty acid omega-hydroxylase
identical to Cytochrome P450 86A1 (CYPLXXXVI)
(P450-dependent fatty acid omega-hydroxylase)
(SP:P48422) [Arabidopsis thaliana]
Length = 513
Score = 26.6 bits (56), Expect = 5.0
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 10 LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLY-EEK 186
+DA K P+ +L F+ + +P D+L+ N V+ S+V S +
Sbjct: 262 IDARKNSPSDDLLSRFLKKRDVNGNVLPTDVLQRIALNFVLAGRDTSSVALSWFFWLVMN 321
Query: 187 KSEVITNVVNKL 222
EV T +VN+L
Sbjct: 322 NREVETKIVNEL 333
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +1
Query: 97 DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIR 228
D+LE++ Y V+ + + +YE ++SEV+ + +K+++
Sbjct: 734 DMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILK 777
>At4g28590.1 68417.m04089 expressed protein
Length = 331
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 353 HKLNRVFGEDKSELNWETIPDD 288
H + V G+D SE++WE DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201
>At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein
/phosphatidylinositol-4-phosphate 5-kinase-related low
similarity to phosphatidylinositol-4-phosphate 5-kinase
AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
Pfam profile PF02493: MORN repeat
Length = 471
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 59 WHLCMLQIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAK 196
W +L PT TT SSF+I+ S + TV+ R + R K
Sbjct: 385 WEDGVLNCPTEQTTRPDSSFSISHSKVVDTVQQARKAAKKAREVVK 430
>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 509
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 43 ILCLFVASLYAA-DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 216
+LC+ +++ DS + + + + +V DYD+ V+ S + E+ S ++TN V+
Sbjct: 405 LLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLMLTNGVD 463
>At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
N-terminus; supporting cDNA gi|23463078|gb|BT000834.1|
Length = 543
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 37 IVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKS 165
++ L + V ++ +VP + E LY+S V D D+++ KS
Sbjct: 405 VMALVMGVVTMIKVTKNVPRKLTESTLYSSPVYCD-DASMNKS 446
>At1g70400.1 68414.m08098 hypothetical protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847
Length = 168
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 10 LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEK 162
+D + P+ +I+ L V +L + +P D+L + + D DSA +K
Sbjct: 104 VDLEGLLPSAMIMVLLVTALTTKGNQLPEDVLLKTIDACDRALDLDSARKK 154
>At4g09870.1 68417.m01616 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain; hypothetical protein
T25N22.10 -Arabidopsis thaliana, PID:g3805763
Length = 337
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 140 ITTVRLKRASIYTRRRRAKSSQMS*TN*Y-ETTR*TAWSSLSTLAPGLQGHRPGL 301
++ VR ++ S+ + R ++ TN ETT+ +WS + TL G+ PGL
Sbjct: 203 LSVVREEKLSVLLQLRGTSRKEIWVTNKINETTQVLSWSKVLTLDNSDFGYCPGL 257
>At3g23010.1 68416.m02901 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; contains similarity to
Cf-2.2 [Lycopersicon pimpinellifolium]
gi|1184077|gb|AAC15780
Length = 595
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 262 NFGSRAPRTSSGIVSQLSSDLSSPK 336
NFG + PR+ S +V+ S DLS K
Sbjct: 151 NFGGQVPRSISKVVNLTSVDLSYNK 175
>At3g09130.1 68416.m01074 hypothetical protein
Length = 397
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 88 VPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKM 240
V ND++EE++ + + YD K+ + K E ++ +N NK+
Sbjct: 103 VENDLIEEEMDTAKLAVGYDGETIVIKNDVDSKWKEELSKPLNLSETENKV 153
>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
identical to alpha-glucosidase I (GI:16506680,
GI:13398928) [Arabidopsis thaliana]
Length = 852
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 100 ILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVV 213
IL + S+V Y EKSK +Y E +S +I NVV
Sbjct: 774 ILSSLYHYSIVDGPYR---EKSKAIYTELRSNLIRNVV 808
>At1g15320.1 68414.m01833 hypothetical protein
Length = 307
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 177 RGEEERSHHKCREQTDTKQQDELHGVAYQLWLQGSKDI 290
R ERSH + ++ TK DEL G Y+LW Q I
Sbjct: 58 RSHAERSH---QHESFTKG-DELSGDLYELWRQEQNSI 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,364,489
Number of Sequences: 28952
Number of extensions: 127682
Number of successful extensions: 543
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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