Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20775
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    33   0.027
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   2.4  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   5.5  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   7.2  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    25   9.5  

>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 280 VCYAIGLSTVPYVTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQAYKIYTV 453
           +C  +G    PY+      PT  KL A C  H Y GV   A+ +L+R     YK+  V
Sbjct: 666 ICMYVGAPFTPYLE-----PTVEKLVA-CTTHFYEGVRKSALSSLWRCATTYYKVCNV 717


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 52  RTLSRIYHNRMRAGCYLYLVRTPRGPSRTQTASLAID 162
           R L  + HN   A C L+ +  P  P+ T TA  A++
Sbjct: 188 RELPIVIHNSHLATCLLHSLSEPPTPASTLTAEAALE 224


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -1

Query: 412 DSALQT*RRLYICVLCRTRTA*H*SGTSPRL*HTARLISRWRSTRC 275
           D  LQT  RL +     +R   H  GT   L    RL+ RW    C
Sbjct: 734 DELLQTDARLRLFHTVSSRLRTHHLGTDVPLSRYCRLVRRWDEESC 779


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 68  SIIIGCVQVATCILSVLLVDRVGRK 142
           SI++G       I++ + +DR+GR+
Sbjct: 371 SIVVGATNFVFTIVAFMFIDRIGRR 395


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +2

Query: 62  QESIIIGCVQVAT---CILSVLLVDRVGRK 142
           ++ +I G V V +   CILS  L+DR+G++
Sbjct: 57  RQGLITGMVNVGSMTGCILSSPLMDRIGKR 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,573
Number of Sequences: 5004
Number of extensions: 56662
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)