Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20775
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    53   2e-07
SB_33931| Best HMM Match : NADH5_C (HMM E-Value=0.67)                  29   4.4  
SB_53907| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-41)                 28   5.8  
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)                 28   5.8  
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)               28   5.8  
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   28   7.6  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 27/98 (27%), Positives = 50/98 (51%)
 Frame = +1

Query: 256 LVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQA 435
           + +++V+ + +A+    VP++ + E+FP   +  AS I+ +      FAV   F  +E A
Sbjct: 399 ITSIVVFNLVFALAWGPVPWLVMSEIFPLQARGIASSISTLCNWSLAFAVTKTFVNIEDA 458

Query: 436 YKIYTVFWGFTIFSFLGLVFMVMMHQKQKESPSPQSKR 549
             I   +W +   SFLG +F++M   + K     Q +R
Sbjct: 459 ITIQGTYWFYGGLSFLGFLFVLMFVPETKGKTLEQIER 496



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 68  SIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFY 214
           S+IIG VQ     ++ L+VD+ GRK                +G YF  Y
Sbjct: 319 SVIIGAVQFVGTGIACLVVDKAGRKLLLWTTALGMTVSLIALGFYFELY 367


>SB_33931| Best HMM Match : NADH5_C (HMM E-Value=0.67)
          Length = 407

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +1

Query: 247 LDTLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVV 426
           L + + +++Y +CY +      YV     +P  V+   +C+ H++  V  FAV N +R  
Sbjct: 267 LSSGIGVVLYSICYWVSEPLGTYVAHAT-WPYVVQ---ACVEHVFLYVLGFAVVNFWRGF 322

Query: 427 EQAYKIYTV 453
                IY +
Sbjct: 323 WNLGNIYLI 331


>SB_53907| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-41)
          Length = 686

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 250 DTLVALIVYIVCYAIGLSTVPYVTIGEM-FPTNVKL-YASCIAHIYTGVAMFAVQNLFRV 423
           DT+VA  +Y +   + L T+P + IG + F   +KL Y     +I       A    ++V
Sbjct: 513 DTVVASQIYFIVIFVFLYTLPLLMIGTLYFRIGLKLWYRKIPGNITKNSTRAAEHAKWKV 572

Query: 424 VEQAYKIYTVF 456
           ++    + TVF
Sbjct: 573 IKMLIIVVTVF 583


>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
          Length = 456

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +2

Query: 53  EPYQESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQA 232
           +P    I+IG VQ     +S+ L+DR GR+               T   YF+        
Sbjct: 375 DPTGVPILIGAVQFVASAISLALIDRGGRRFLLIVAGVGMSISCFTCAVYFFITVNFGMT 434

Query: 233 VQNVSWI 253
             +++W+
Sbjct: 435 EVDIAWL 441


>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
          Length = 857

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 2   PTILPNGTLEEKTRKSIEPYQES 70
           P  LP G L E + K I P+QES
Sbjct: 435 PVALPRGPLREISNKPIPPFQES 457


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 378 IYRRRYVCSAESLPGCRTSL*NLHSVLGVHYFLISWTRLHGDDAPETKGKS 530
           +  R Y+  AE   G   ++  +H VLG  YF I   + H D   E +GKS
Sbjct: 259 VVHRVYLYYAE---GHYDTITKVHRVLGCTYFCIPCNKGHKDPHHECRGKS 306


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 459 GVHYFLISWTRLHGDDAPETKGKSFASIQAQLRHEV 566
           G HY L +  R+   DAP    K+  + QA +R+ V
Sbjct: 34  GSHYSLNTGRRVFHQDAPAASAKTTCAPQADMRYSV 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,953,392
Number of Sequences: 59808
Number of extensions: 451669
Number of successful extensions: 1183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)