Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20775
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical ... 38 0.008
AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical ... 36 0.033
AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical ... 34 0.10
U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical pr... 31 0.71
AF040646-6|AAK31540.1| 510|Caenorhabditis elegans Hypothetical ... 31 0.94
AF040646-5|AAK31539.1| 492|Caenorhabditis elegans Hypothetical ... 31 0.94
AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical ... 31 0.94
Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical p... 29 2.2
Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical pr... 29 2.9
U20861-4|AAA62296.3| 297|Caenorhabditis elegans Hypothetical pr... 27 8.8
>AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical
protein Y51A2D.5 protein.
Length = 613
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/84 (20%), Positives = 40/84 (47%)
Frame = +1
Query: 256 LVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQA 435
+V + VY++ ++ G +++P+V E +P + I+ + V + + + A
Sbjct: 476 IVMMGVYLLTFSCGFTSLPWVLNSEFYPMWARSTCVSISTLSNWVFNLIIALTYLSLTHA 535
Query: 436 YKIYTVFWGFTIFSFLGLVFMVMM 507
Y FW + IF+ + +F+ +
Sbjct: 536 ITKYGAFWLYAIFTIIAFIFIYFL 559
>AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical
protein Y51A2D.4 protein.
Length = 606
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +1
Query: 256 LVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQA 435
++A VY++ ++ G +++P+V E +P + I+ V + + + Q
Sbjct: 468 IIACGVYLLTFSSGFTSLPWVLNSEFYPMWARSTCVAISTTSNWVFNLIIALTYLSLTQV 527
Query: 436 YKIYTVFW---GFTIFSFLGLVFMV 501
Y FW G T+ +F+ ++F+V
Sbjct: 528 IGKYGAFWLYAGLTVIAFIFILFLV 552
>AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical
protein Y106G6D.3 protein.
Length = 555
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 509 TRNKRKVLRLNPSATAPRSRQRQPQRKLTRSNTNQKIRDD 628
+RN RK R N S + RS++R QRK + S +K+R +
Sbjct: 40 SRNSRKSSRSNKSKRSQRSKRRSAQRKKSSSRRKKKLRKE 79
>U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical
protein F53H8.3 protein.
Length = 569
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/93 (19%), Positives = 42/93 (45%)
Frame = +1
Query: 253 TLVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQ 432
T+ +L+ Y+ Y +G S +P++ E+F + A ++ F V + +Q
Sbjct: 424 TIFSLVFYMCVYGVG-SPIPWIIASELFTQQFRATAVTVSVFVAWTFAFIVSTSYLPFQQ 482
Query: 433 AYKIYTVFWGFTIFSFLGLVFMVMMHQKQKESP 531
I ++ F I + +F+ ++ + ++ P
Sbjct: 483 LVGITFSYFPFIIGLAVFGIFIYVLLPETRDRP 515
>AF040646-6|AAK31540.1| 510|Caenorhabditis elegans Hypothetical
protein H17B01.1b protein.
Length = 510
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 265 LIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQAYKI 444
++++++ +A G +P+ + E+F ++ + A+ IA + A V F + +
Sbjct: 411 VLLFVISFATGPGAIPWFFVSEIFDSSARGNANSIAVMVNWAANLLVGLTFLPINNLMQQ 470
Query: 445 YT--VFWGFTIF 474
Y+ +F GF F
Sbjct: 471 YSFFIFSGFLAF 482
>AF040646-5|AAK31539.1| 492|Caenorhabditis elegans Hypothetical
protein H17B01.1a protein.
Length = 492
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 265 LIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQAYKI 444
++++++ +A G +P+ + E+F ++ + A+ IA + A V F + +
Sbjct: 393 VLLFVISFATGPGAIPWFFVSEIFDSSARGNANSIAVMVNWAANLLVGLTFLPINNLMQQ 452
Query: 445 YT--VFWGFTIF 474
Y+ +F GF F
Sbjct: 453 YSFFIFSGFLAF 464
>AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical
protein R09B5.11 protein.
Length = 516
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 265 LIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQAYKI 444
++ ++V +A G +P+ E+F + + A+ ++ VA + V F +
Sbjct: 412 ILSFVVTFAFGPGPIPWFFTSELFDSATRGRAAAVSATSNWVANWMVGLTFLPINNIIHQ 471
Query: 445 YTVFWGFTIFSFLGLVF-MVMMHQKQKESPS 534
Y F FT F+F +F + + + +SPS
Sbjct: 472 Y-AFLMFTFFTFTFAIFTWKFVPETKGKSPS 501
>Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +1
Query: 256 LVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAH----IYTGVAMFAVQNLFRV 423
LVALI+Y Y G+ + + E+ P + A +A+ + ++ F V L+ V
Sbjct: 370 LVALIIYGYTYGTGVGPISWFISSELVPQKHRSIAQSVAYSMNTVMVVISTFTVLPLYSV 429
Query: 424 VEQAYKIYTVFWGFTIFSFLGLVFMVMMHQKQKE 525
+ +Y + + + F + ++F + K +E
Sbjct: 430 I-GSY-AFLILYSIPSFISMLILFRYLPETKGRE 461
>Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +1
Query: 256 LVALIVYIVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAH----IYTGVAMFAVQNLFRV 423
LVALI+Y Y G+ + + E+ P + A +A+ + ++ F V L+ V
Sbjct: 370 LVALIIYGYTYGTGVGPISWFISSELVPQKHRSIAQSVAYSMNTVMVVISTFTVLPLYSV 429
Query: 424 VEQAYKIYTVFWGFTIFSFLGLVFMVMMHQKQKE 525
+ +Y + + + F + ++F + K +E
Sbjct: 430 I-GSY-AFLILYSIPSFISMLILFRYLPETKGRE 461
>Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical
protein F25D1.4 protein.
Length = 882
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 415 FRVVEQAYKI-YTVFWGFTIFSFLGLVF 495
FR + YK + V WGF + F+GL F
Sbjct: 53 FRYLHTRYKTWFRVLWGFVVVFFIGLTF 80
>U20861-4|AAA62296.3| 297|Caenorhabditis elegans Hypothetical
protein C28H8.8 protein.
Length = 297
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 277 IVCYAIGLSTVPYVTIGEMFPTNVKLYASCIAHIYTG 387
+V IGL T+ E PTN + YA+ IYTG
Sbjct: 112 VVTLGIGLDVKAETTLKETLPTNSRFYAA--DPIYTG 146
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,229,778
Number of Sequences: 27780
Number of extensions: 325233
Number of successful extensions: 1053
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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