Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20775
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.28 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.28 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 35  KTRKSIEPYQESIIIGCVQVATCILSVLLV 124
           KTRK  E + ES  IG     TCI+ +  V
Sbjct: 694 KTRKIPENFNESKFIGFTMYTTCIIWLAFV 723


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 35  KTRKSIEPYQESIIIGCVQVATCILSVLLV 124
           KTRK  E + ES  IG     TCI+ +  V
Sbjct: 784 KTRKIPENFNESKFIGFTMYTTCIIWLAFV 813



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 316 VTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQAYKIYTVFWGFTI 471
           + +G +FP + K  ASC  ++Y          LF  V+Q  +   +  G TI
Sbjct: 57  IVLGGLFPVHEKGGASCGPNVYNRGVQRLEAMLF-AVDQINRDEDILPGITI 107


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 38  TRKSIEPYQESIIIGCVQVATCILSVLLV 124
           TRK  E + ES  IG     TC++ +  V
Sbjct: 837 TRKIPEAFNESKHIGFTMYTTCVIWLAFV 865


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 260 WPLSFTSCATPSAYQPCRMLQSGRCSR 340
           W +S  +C+ P    P    +SGR  R
Sbjct: 385 WQMSCVACSPPPRQTPPSRKESGRRRR 411


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 354 QLDISREHLPDCNIRH 307
           QLDIS  +  DC I +
Sbjct: 180 QLDISNNYTTDCTIEY 195


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 236 VRLACSYRKSRNTFRLFHSLVLRPKSI 156
           VRLAC +    N+    +  VL+ +SI
Sbjct: 281 VRLACMFDAQTNSMICLNGQVLKRESI 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,625
Number of Sequences: 438
Number of extensions: 3879
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)