Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20773
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    82   6e-17
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    35   0.012
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    31   0.19 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   3.1  

>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
 Frame = +1

Query: 256 PDKPNIQT-AIPGPKSQQLLKELNTLQQAGAVQLFADYDKSIGNYFFDADGNAFLDAFTQ 432
           P  P+I+T  IPGPK +   +E++      AV+   DY+KSIGNY  D DGN  LD ++Q
Sbjct: 18  PQGPSIKTETIPGPKGKAAAEEMSKYHDISAVKFPVDYEKSIGNYLVDLDGNVLLDVYSQ 77

Query: 433 ISSLPVGYNHPELLSA 480
           I+++P+GYN+P LL A
Sbjct: 78  IATIPIGYNNPTLLKA 93



 Score = 32.7 bits (71), Expect = 0.048
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 507 LINRPALGVFPSADWPEKLKNVLLSVGPVGLDNIAPMMCGXCSIENAYK 653
           L+NRPALG +P  +W        +   P G   +   M G  + E AYK
Sbjct: 103 LMNRPALGNYPPKEWARVAYEGAIKYAPKGQKYVYFQMSGSDANEIAYK 151


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
 Frame = +1

Query: 322 NTLQQAGA--VQLFADYD----KSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAF 483
           N +++ GA  + ++A Y     K  G+Y FD +G  ++D  + ++   +G+ HPE+    
Sbjct: 38  NIIKKEGANIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLA 97

Query: 484 EDQ 492
            DQ
Sbjct: 98  ADQ 100


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 364 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 492
           + K+ G   +D +G  +LD  +  S++  G+ HP+++ A  +Q
Sbjct: 35  FSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQ 77


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -3

Query: 499 DCVDLQMRLIIQDDYTPREEKIFV*-----KHLGMHYHRRQRNNFQYFC 368
           + +D   R+I + D    + KIF       K LG+H  R+ +N+++Y C
Sbjct: 773 EAMDKASRVISEADEEAMKNKIFKIEGTQRKILGIHSRRKLKNSYEYEC 821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,996
Number of Sequences: 5004
Number of extensions: 50110
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)