Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20773
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0699 - 6163662-6163680,6163865-6163943,6163979-6164048,616... 40 0.002
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 38 0.005
03_05_0467 - 24615243-24615384,24619166-24619450,24619516-246195... 36 0.028
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 34 0.087
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383... 34 0.11
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039... 33 0.20
08_01_0126 - 1008469-1008477,1009055-1009396,1009499-1010167,101... 31 1.1
11_06_0511 - 24434007-24436814 28 7.5
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164... 28 7.5
09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151... 27 9.9
08_02_0848 - 21835146-21835217,21835712-21835759,21835846-218359... 27 9.9
>08_01_0699 -
6163662-6163680,6163865-6163943,6163979-6164048,
6164151-6164266,6164656-6164734,6164831-6164921,
6165006-6165084,6165161-6165248,6165371-6165454,
6165544-6165591,6166118-6166192,6166286-6166362,
6166460-6166548,6166711-6166749,6167133-6167206,
6167496-6167588,6167820-6167917,6168100-6168172,
6168322-6168406,6168513-6168634,6169307-6169414,
6169537-6169608
Length = 585
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 367 DKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHN 498
D+S G+Y +D +G ++DA + S +G N P L+ A DQ N
Sbjct: 126 DRSEGSYVYDINGKKYIDALAGLWSTALGGNEPRLIKAATDQLN 169
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +1
Query: 355 FADYDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 492
+ DY K Y FD DG +LDAF I+++ G+ HP+++ A +Q
Sbjct: 93 YRDYHK----YLFDEDGRRYLDAFGGIATVCCGHCHPDVVEAMVNQ 134
>03_05_0467 -
24615243-24615384,24619166-24619450,24619516-24619596,
24619807-24619904,24620038-24620190,24620705-24620760,
24620844-24621003,24621416-24621646,24621795-24621903,
24622642-24622799
Length = 490
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +1
Query: 364 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 492
+ K G++ D +GN ++D + S++ G+ HP++L A ++Q
Sbjct: 61 FSKGEGSHILDPEGNKYIDFLSAYSAVNQGHCHPKVLRALKEQ 103
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 385 YFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 492
Y FD G +LDAF I+++ G+ HP+++ A Q
Sbjct: 74 YLFDERGRRYLDAFAGIATVCCGHCHPDVVGAIAAQ 109
>03_01_0509 +
3836284-3836547,3836927-3837157,3837253-3837423,
3838379-3838522,3838640-3838819,3838926-3839151,
3839326-3839439,3839541-3839627,3839711-3839754
Length = 486
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 385 YFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNL 501
Y +D +G +LD F I ++ G+ HP++++A +Q L
Sbjct: 98 YLYDENGKRYLDCFGGIVTVSCGHCHPDIVNAVVEQTKL 136
>04_04_1143 +
31202901-31203034,31203312-31203345,31203913-31203985,
31204090-31204187,31204356-31204448,31205081-31205154,
31205680-31205768,31205859-31205935,31206016-31206090,
31206438-31206485,31206571-31206654,31206734-31206821,
31206896-31206974,31207072-31207162,31207724-31207802,
31208219-31208334,31208430-31208488,31210292-31210342,
31211418-31211444,31211725-31211809,31211952-31212024,
31212154-31212251,31212385-31212477,31212972-31213045,
31213258-31213296,31213410-31213498,31213583-31213707,
31213750-31213824,31214225-31214272,31214359-31214442,
31214574-31214661,31214762-31214840,31214930-31215020,
31215113-31215191,31215485-31215600,31215910-31215987
Length = 960
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 379 GNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHN 498
G+Y +D+ GN +LD + +G + P L+ A DQ N
Sbjct: 57 GSYVYDSKGNKYLDTLAGLWCTALGGSEPRLVKAATDQLN 96
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 367 DKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ-HNL 501
++S G+Y +D DG +LD+ + +G + P L+ A +Q H L
Sbjct: 515 ERSEGSYVYDIDGKKYLDSLAGLWCTALGGSEPRLVKAATEQLHKL 560
>08_01_0126 -
1008469-1008477,1009055-1009396,1009499-1010167,
1010264-1010446,1010491-1010550,1010551-1010649
Length = 453
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 343 AVQLFADYDKSIGNYFFDADGNAFLDAF 426
AVQ+ AD D SI + +DG F+D F
Sbjct: 66 AVQVLADLDLSINKAYISSDGRWFMDVF 93
>11_06_0511 - 24434007-24436814
Length = 935
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 265 PNIQTAIPGPKSQQLLKELNTLQQAGAVQLF 357
P+I A+ PK+ LKEL TL+ A F
Sbjct: 705 PDIYRAVKAPKTVNYLKELRTLETVQASDTF 735
>08_01_0207 -
1647168-1647251,1647583-1647726,1648176-1648287,
1648392-1648573,1648649-1648780,1648900-1649856,
1649949-1650734
Length = 798
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 307 LLKELNTLQQAGAVQLFADYDKSIGNYFFDADGNAFLD 420
L EL+ QA ADY+ I + D DG+A LD
Sbjct: 311 LRHELSNSDQAARAMTDADYNDEIACHVDDCDGDARLD 348
>09_04_0570 -
18614227-18614574,18614729-18614842,18614933-18615130,
18615290-18615463,18615546-18615752,18615886-18616180,
18616269-18617275
Length = 780
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 292 PKSQQLLKELNTLQQAGAVQLFADYDKSIGNYFFDADGNAFLDAFTQISSLPVG 453
P Q L+K++++ +AG++ A D+ GN+ AF DAF++I L G
Sbjct: 438 PHMQTLVKDISS-PKAGSLLGPALGDQQQGNFSIHLWKTAFQDAFSRICPLRAG 490
>08_02_0848 -
21835146-21835217,21835712-21835759,21835846-21835943,
21836028-21836136,21837362-21837594,21837664-21837749,
21838038-21838095,21839068-21839135,21839258-21839565
Length = 359
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 295 KSQQLLKELNTLQQAGAVQLFADYDKSIG--NYFFDADG 405
KS Q L NT+Q L DY K +G +Y+ ++DG
Sbjct: 308 KSSQRLVAHNTIQIIAEWHLNCDYSKEVGVKSYWLNSDG 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,979,807
Number of Sequences: 37544
Number of extensions: 297704
Number of successful extensions: 661
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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