Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20773
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   5e-14
SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)           29   2.5  
SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_56986| Best HMM Match : Peptidase_M50 (HMM E-Value=3.8)             28   5.8  
SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 36/80 (45%), Positives = 51/80 (63%)
 Frame = +1

Query: 268 NIQTAIPGPKSQQLLKELNTLQQAGAVQLFADYDKSIGNYFFDADGNAFLDAFTQISSLP 447
           +++T++PGPKSQ           +  ++ F D++KS GNY  DADGN  LD + QI+S+P
Sbjct: 128 DMRTSVPGPKSQS----------SKGMKYFVDFEKSKGNYVVDADGNVMLDVYQQIASIP 177

Query: 448 VGYNHPELLSAFEDQHNLKS 507
           +GYNHP LL A +D   L S
Sbjct: 178 LGYNHPALLKAMQDPEILVS 197



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 582 VGPVGLDNIAPMMCGXCSIENAYK 653
           V P GL  +  M CG C+ ENA K
Sbjct: 196 VSPKGLTEVTTMACGTCANENAIK 219


>SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)
          Length = 623

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 364 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 492
           YD     YFFD D + F        +  + Y   E +S+FED+
Sbjct: 73  YDAETKEYFFDRDPDLFRHLLNYYRNGKLHYPRGECVSSFEDE 115


>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 391 FDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKS 507
           +D  G  ++D     S++  G+ HP ++ A +DQ  + S
Sbjct: 2   WDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILS 40


>SB_56986| Best HMM Match : Peptidase_M50 (HMM E-Value=3.8)
          Length = 216

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 164 FLILSIKMLLRTSRSAHVFRG---VRAYSVLQHDQINPIFKQRFPGPSRSSC 310
           +LIL++     T+ +A  +RG   V  Y V  HD + P  + R   P   SC
Sbjct: 45  YLILTLYFACSTALTAVYYRGEWFVGEYDVQDHDALKPRSRSRPGDPRDPSC 96


>SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 621 TSLALCCPTQRVQQIITHFSISLANQ 544
           TS A+C    R+Q+II  + ++L NQ
Sbjct: 810 TSQAICSEPIRIQEIIVKYHVNLVNQ 835


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,601,363
Number of Sequences: 59808
Number of extensions: 345170
Number of successful extensions: 688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)