Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20773
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical pr... 101 3e-22
U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical pr... 35 0.044
AC084197-25|AAK68591.1| 609|Caenorhabditis elegans Hypothetical... 31 0.95
U58757-5|AAC47919.3| 555|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF040645-4|AAB94974.1| 306|Caenorhabditis elegans Hypothetical ... 28 5.1
Z81116-7|CAB03306.1| 669|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 27 8.9
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 27 8.9
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 8.9
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 8.9
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 8.9
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 8.9
>Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical
protein K04D7.3 protein.
Length = 483
Score = 101 bits (243), Expect = 3e-22
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +1
Query: 256 PDKPNIQTAIPGPKSQQLLKELNTLQQAGAVQLFADYDKSIGNYFFDADGNAFLDAFTQI 435
P P+I T+IPGPKS+ L +E++ + Q +V+ DY+KS GNY DADGNA LD +TQI
Sbjct: 25 PSGPSISTSIPGPKSKALKQEMDKVHQTTSVRFHVDYEKSFGNYVVDADGNALLDVYTQI 84
Query: 436 SSLPVGYNHPELLSAFEDQHNLKS 507
SSLP+GYNHP+L+ H + S
Sbjct: 85 SSLPLGYNHPDLVKVASQPHLITS 108
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +3
Query: 507 LINRPALGVFPSADWPEKLKNVLLSVGPVGLDNIAPMMCGXCSIENAYKT 656
L++RPALG FP D+ + + + L S+ P GL + M+CG + ENA KT
Sbjct: 109 LVSRPALGSFPRTDFADGISHALTSIAPKGLKAVQTMLCGTSANENAIKT 158
>U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical
protein T09B4.8 protein.
Length = 444
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +1
Query: 304 QLLKELNTLQQAGAVQLFADY---DKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELL 474
Q ++ L L G V + D K + FD++G +LD F I ++ VG+ HP++
Sbjct: 2 QRVQALRPLLPKGHVTYYKDQLLITKGEKQFLFDSNGKKYLDFFGGIVTVSVGHCHPKIN 61
Query: 475 SAFEDQ 492
+A +Q
Sbjct: 62 AALTEQ 67
>AC084197-25|AAK68591.1| 609|Caenorhabditis elegans Hypothetical
protein Y73B6BL.19 protein.
Length = 609
Score = 30.7 bits (66), Expect = 0.95
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 364 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQ 492
YD+ G YFFD D + F T + + Y E L A++++
Sbjct: 81 YDEDTGEYFFDRDPDIFRHILTFYRTGKLHYPRHECLVAYDEE 123
>U58757-5|AAC47919.3| 555|Caenorhabditis elegans Hypothetical
protein C01B10.9 protein.
Length = 555
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 343 AVQLFADYDKSIGNYFFDADGNAFLDAF 426
A LF + +GNYFFDAD D F
Sbjct: 76 ATGLFEEEHGIVGNYFFDADTKKAFDYF 103
>AF040645-4|AAB94974.1| 306|Caenorhabditis elegans Hypothetical
protein F52C6.8 protein.
Length = 306
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 385 NFQYFCHNQQKAELLPLAVEC*VLSAAAATWARESLFEY 269
N Q++ K E + + + C +L A ATW ++ FE+
Sbjct: 35 NVQWYMAVSHKKEDMAVYLHCNILGKAEATWCIDAEFEF 73
>Z81116-7|CAB03306.1| 669|Caenorhabditis elegans Hypothetical
protein T06C12.8 protein.
Length = 669
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 364 YDKSIGNY-FFDADGNAFLDAFTQISSL 444
Y+ S G Y FFD +G ++L F+Q++ L
Sbjct: 573 YNISTGTYRFFDTNGFSYLSVFSQLTPL 600
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 192 NNILILRIKNFVDRTSRFCCTSKSNL 115
N++ +L + N D+ CC SKSN+
Sbjct: 126 NSVPVLLVANKTDKPCLSCCASKSNM 151
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 65 WGVIKFLLHT*VPIPNYKFDLEVQQNLEVRSTKF--LILSIKMLLRTSRSA 211
+GVI LH V +P+ K D++VQ L+ + F L++ ++ SR++
Sbjct: 1274 FGVIWIFLHFFVALPSSKIDVDVQVELKKFTYTFGYLVVILRFFTIASRNS 1324
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 65 WGVIKFLLHT*VPIPNYKFDLEVQQNLEVRSTKF--LILSIKMLLRTSRSA 211
+GVI LH V +P+ K D++VQ L+ + F L++ ++ SR++
Sbjct: 1308 FGVIWIFLHFFVALPSSKIDVDVQVELKKFTYTFGYLVVILRFFTIASRNS 1358
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 65 WGVIKFLLHT*VPIPNYKFDLEVQQNLEVRSTKF--LILSIKMLLRTSRSA 211
+GVI LH V +P+ K D++VQ L+ + F L++ ++ SR++
Sbjct: 1366 FGVIWIFLHFFVALPSSKIDVDVQVELKKFTYTFGYLVVILRFFTIASRNS 1416
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 65 WGVIKFLLHT*VPIPNYKFDLEVQQNLEVRSTKF--LILSIKMLLRTSRSA 211
+GVI LH V +P+ K D++VQ L+ + F L++ ++ SR++
Sbjct: 1419 FGVIWIFLHFFVALPSSKIDVDVQVELKKFTYTFGYLVVILRFFTIASRNS 1469
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 65 WGVIKFLLHT*VPIPNYKFDLEVQQNLEVRSTKF--LILSIKMLLRTSRSA 211
+GVI LH V +P+ K D++VQ L+ + F L++ ++ SR++
Sbjct: 1338 FGVIWIFLHFFVALPSSKIDVDVQVELKKFTYTFGYLVVILRFFTIASRNS 1388
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,161,721
Number of Sequences: 27780
Number of extensions: 277165
Number of successful extensions: 603
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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