Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20773
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.64 
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    24   1.1  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    24   1.5  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    24   1.5  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    24   1.5  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    24   1.5  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    24   1.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.5  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   5.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 362 SAKS*TAPACCRVLSSFSSCCDLGPG 285
           S++S TA A  R+  +FSS CD  PG
Sbjct: 59  SSESLTAQAHHRLYPAFSSSCDPVPG 84


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 448 REEKIFV*KHLGMHYHRRQRNNFQYFCHNQQKAELLPLAV 329
           +E KI        +Y     NN++  C+N    E +P+ V
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINHIEQIPVPV 116


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 448 REEKIFV*KHLGMHYHRRQRNNFQYFCHNQQKAELLPLAV 329
           +E KI        +Y     NN++  C+N    E +P+ V
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINYIEQIPVPV 116


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 448 REEKIFV*KHLGMHYHRRQRNNFQYFCHNQQKAELLPLAV 329
           +E KI        +Y     NN++  C+N    E +P+ V
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINYIEQIPVPV 116


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 448 REEKIFV*KHLGMHYHRRQRNNFQYFCHNQQKAELLPLAV 329
           +E KI        +Y     NN++  C+N    E +P+ V
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINYIEQIPVPV 116


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 448 REEKIFV*KHLGMHYHRRQRNNFQYFCHNQQKAELLPLAV 329
           +E KI        +Y     NN++  C+N    E +P+ V
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINYIEQIPVPV 116


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 448 REEKIFV*KHLGMHYHRRQRNNFQYFCHNQQKAELLPLAV 329
           +E KI        +Y     NN++  C+N    E +P+ V
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLCYNINYIEQIPVPV 116


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 606 CCPTQRVQQIITHFSIS 556
           CCP      I+  FSIS
Sbjct: 233 CCPNDTYPMIVYEFSIS 249


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 94  SMQQKFYYSPLSGTVRNNRVRLNITEC 14
           S+QQK  Y P +   + + +R+N   C
Sbjct: 45  SIQQKIQYRPCTKNQQCSILRINRNRC 71


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 94  SMQQKFYYSPLSGTVRNNRVRLNITEC 14
           S+QQK  Y P +   + + +R+N   C
Sbjct: 94  SIQQKIQYRPCTKNQQCSILRINRNRC 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,805
Number of Sequences: 438
Number of extensions: 3565
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)