Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20334
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    54   9e-09
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   2.7  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   6.3  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 54.4 bits (125), Expect = 9e-09
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = +3

Query: 69  IVMSQANVSRAKAVRALKNNQSDIVNAIMELTM 167
           +VM+QANVSRAKAV ALK N SD+VNAIM LTM
Sbjct: 141 LVMAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 320 CLYNLQILK*FCLATFLFSNVC 385
           C Y L IL   CLA+FL+ + C
Sbjct: 56  CNYALSILHNICLASFLYLSKC 77


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 467 PX*W*FHLQ-KRWPPVAYINENKALAYTCIHY*KEMWPNRITLKF 336
           P  W F++  + W  ++ INE +   + C  Y      N +TL F
Sbjct: 526 PSLWIFYITTEEWVKISDINEEEGNEHPCSRYVFGKKVNHLTLNF 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,925
Number of Sequences: 5004
Number of extensions: 23729
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)